Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1871373..1871518 | Replicon | chromosome |
| Accession | NZ_LR890291 | ||
| Organism | Klebsiella pneumoniae strain KSB1_1B | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1871409..1871511 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1871373..1871518 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMW65_RS09135 | 1866503..1868563 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| JMW65_RS09140 | 1868567..1869226 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| JMW65_RS09145 | 1869305..1869535 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| JMW65_RS09150 | 1869648..1870022 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| JMW65_RS09155 | 1870026..1870895 | + | 870 | WP_094644986.1 | copper homeostasis membrane protein CopD | - |
| JMW65_RS09160 | 1870912..1871250 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1871373..1871518 | - | 146 | - | - | Antitoxin |
| - | 1871409..1871511 | + | 103 | - | - | Toxin |
| JMW65_RS09165 | 1871886..1872029 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| JMW65_RS09170 | 1872134..1873102 | - | 969 | WP_074181864.1 | VirK/YbjX family protein | - |
| JMW65_RS09175 | 1873259..1873912 | + | 654 | WP_004175436.1 | protein-serine/threonine phosphatase | - |
| JMW65_RS09180 | 1873909..1874100 | - | 192 | WP_002911395.1 | YebW family protein | - |
| JMW65_RS09185 | 1874198..1874437 | - | 240 | WP_002911393.1 | YebV family protein | - |
| JMW65_RS09190 | 1874553..1875986 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T290533 NZ_LR890291:1871409-1871511 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT290533 NZ_LR890291:c1871518-1871373 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
