Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1792042..1792187 | Replicon | chromosome |
| Accession | NZ_LR890286 | ||
| Organism | Klebsiella pneumoniae isolate INF156-sc-2280002 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1792078..1792180 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1792042..1792187 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMV92_RS08655 | 1787172..1789232 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| JMV92_RS08660 | 1789236..1789895 | - | 660 | WP_021440386.1 | exodeoxyribonuclease X | - |
| JMV92_RS08665 | 1789974..1790204 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| JMV92_RS08670 | 1790317..1790691 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| JMV92_RS08675 | 1790695..1791564 | + | 870 | WP_023282759.1 | copper homeostasis membrane protein CopD | - |
| JMV92_RS08680 | 1791581..1791919 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1792042..1792187 | - | 146 | - | - | Antitoxin |
| - | 1792078..1792180 | + | 103 | - | - | Toxin |
| JMV92_RS08685 | 1792555..1792698 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| JMV92_RS08690 | 1792803..1793771 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| JMV92_RS08695 | 1793928..1794581 | + | 654 | WP_004175436.1 | protein-serine/threonine phosphatase | - |
| JMV92_RS08700 | 1794578..1794769 | - | 192 | WP_002911395.1 | YebW family protein | - |
| JMV92_RS08705 | 1794867..1795106 | - | 240 | WP_002911393.1 | YebV family protein | - |
| JMV92_RS08710 | 1795222..1796655 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T290482 NZ_LR890286:1792078-1792180 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT290482 NZ_LR890286:c1792187-1792042 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
