Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1905691..1905836 | Replicon | chromosome |
| Accession | NZ_LR890217 | ||
| Organism | Klebsiella pneumoniae isolate INF357-sc-2280189 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1905727..1905829 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1905691..1905836 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMV73_RS09350 | 1900821..1902881 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| JMV73_RS09355 | 1902885..1903544 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| JMV73_RS09360 | 1903623..1903853 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| JMV73_RS09365 | 1903966..1904340 | + | 375 | WP_048279882.1 | CopC domain-containing protein YobA | - |
| JMV73_RS09370 | 1904344..1905213 | + | 870 | WP_048279880.1 | copper homeostasis membrane protein CopD | - |
| JMV73_RS09375 | 1905230..1905568 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1905691..1905836 | - | 146 | - | - | Antitoxin |
| - | 1905727..1905829 | + | 103 | - | - | Toxin |
| JMV73_RS09380 | 1906204..1906347 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| JMV73_RS09385 | 1906452..1907420 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| JMV73_RS09390 | 1907577..1908230 | + | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| JMV73_RS09395 | 1908227..1908418 | - | 192 | WP_002911395.1 | YebW family protein | - |
| JMV73_RS09400 | 1908516..1908755 | - | 240 | WP_002911393.1 | YebV family protein | - |
| JMV73_RS09405 | 1908871..1910304 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T290327 NZ_LR890217:1905727-1905829 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT290327 NZ_LR890217:c1905836-1905691 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
