Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1869848..1869993 | Replicon | chromosome |
| Accession | NZ_LR890209 | ||
| Organism | Klebsiella pneumoniae isolate INF022-sc-2279895 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1869884..1869986 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1869848..1869993 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMW18_RS09120 | 1864978..1867038 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| JMW18_RS09125 | 1867042..1867701 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| JMW18_RS09130 | 1867780..1868010 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| JMW18_RS09135 | 1868123..1868497 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| JMW18_RS09140 | 1868501..1869370 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| JMW18_RS09145 | 1869387..1869725 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1869848..1869993 | - | 146 | - | - | Antitoxin |
| - | 1869884..1869986 | + | 103 | - | - | Toxin |
| JMW18_RS09150 | 1870361..1870504 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| JMW18_RS09155 | 1870610..1871578 | - | 969 | WP_201519514.1 | VirK/YbjX family protein | - |
| JMW18_RS09160 | 1871735..1872388 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| JMW18_RS09165 | 1872385..1872576 | - | 192 | WP_002911395.1 | YebW family protein | - |
| JMW18_RS09170 | 1872674..1872913 | - | 240 | WP_002911393.1 | YebV family protein | - |
| JMW18_RS09175 | 1872979..1874460 | - | 1482 | WP_201519515.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T290311 NZ_LR890209:1869884-1869986 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT290311 NZ_LR890209:c1869993-1869848 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
