Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 551839..551984 | Replicon | chromosome |
| Accession | NZ_LR890202 | ||
| Organism | Klebsiella pneumoniae isolate INF008-sc-2279879 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 551875..551977 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 551839..551984 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMV80_RS02605 | 546969..549029 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| JMV80_RS02610 | 549033..549692 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| JMV80_RS02615 | 549771..550001 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| JMV80_RS02620 | 550114..550488 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| JMV80_RS02625 | 550492..551361 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| JMV80_RS02630 | 551378..551716 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 551839..551984 | - | 146 | - | - | Antitoxin |
| - | 551875..551977 | + | 103 | - | - | Toxin |
| JMV80_RS02635 | 552352..552495 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| JMV80_RS02640 | 552600..553568 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| JMV80_RS02645 | 553725..554378 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| JMV80_RS02650 | 554375..554566 | - | 192 | WP_002911395.1 | YebW family protein | - |
| JMV80_RS02655 | 554664..554903 | - | 240 | WP_002911393.1 | YebV family protein | - |
| JMV80_RS02660 | 555019..556452 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T290276 NZ_LR890202:551875-551977 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT290276 NZ_LR890202:c551984-551839 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
