Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2283308..2283576 | Replicon | chromosome |
| Accession | NZ_LR890198 | ||
| Organism | Escherichia coli isolate MINF_1D-sc-2280456 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2283436..2283538 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2283308..2283576 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMV89_RS10645 | 2279862..2280524 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JMV89_RS10650 | 2280547..2281203 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| JMV89_RS10655 | 2281305..2281535 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JMV89_RS10660 | 2281674..2282048 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JMV89_RS10665 | 2282052..2282924 | + | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| JMV89_RS10670 | 2282937..2283278 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2283308..2283576 | - | 269 | - | - | Antitoxin |
| - | 2283436..2283538 | + | 103 | - | - | Toxin |
| JMV89_RS10675 | 2283673..2284329 | + | 657 | WP_000812742.1 | protein-serine/threonine phosphatase | - |
| JMV89_RS10680 | 2284330..2284521 | - | 192 | WP_001317886.1 | YebW family protein | - |
| JMV89_RS10685 | 2284626..2284862 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JMV89_RS10690 | 2284980..2286419 | - | 1440 | WP_001704100.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T290248 NZ_LR890198:2283436-2283538 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT290248 NZ_LR890198:c2283576-2283308 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
