Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1957397..1957542 | Replicon | chromosome |
| Accession | NZ_LR890185 | ||
| Organism | Klebsiella pneumoniae isolate INF072-sc-2279995 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1957433..1957535 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1957397..1957542 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMV85_RS09585 | 1952527..1954587 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| JMV85_RS09590 | 1954591..1955250 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| JMV85_RS09595 | 1955329..1955559 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| JMV85_RS09600 | 1955672..1956046 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| JMV85_RS09605 | 1956050..1956919 | + | 870 | WP_023316211.1 | copper homeostasis membrane protein CopD | - |
| JMV85_RS09610 | 1956936..1957274 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1957397..1957542 | - | 146 | - | - | Antitoxin |
| - | 1957433..1957535 | + | 103 | - | - | Toxin |
| JMV85_RS09615 | 1957910..1958053 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| JMV85_RS09620 | 1958158..1959126 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| JMV85_RS09625 | 1959283..1959936 | + | 654 | WP_019725444.1 | protein-serine/threonine phosphatase | - |
| JMV85_RS09630 | 1959933..1960124 | - | 192 | WP_002911395.1 | YebW family protein | - |
| JMV85_RS09635 | 1960222..1960461 | - | 240 | WP_002911393.1 | YebV family protein | - |
| JMV85_RS09640 | 1960577..1962010 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T290212 NZ_LR890185:1957433-1957535 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT290212 NZ_LR890185:c1957542-1957397 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
