Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 258312..258583 | Replicon | chromosome |
| Accession | NZ_LR883965 | ||
| Organism | Escherichia coli isolate 2016-17-550 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 258442..258545 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 258312..258583 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMV10_RS01270 | 254867..255529 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JMV10_RS01275 | 255553..256209 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| JMV10_RS01280 | 256311..256541 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JMV10_RS01285 | 256680..257054 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| JMV10_RS01290 | 257058..257930 | + | 873 | WP_000879285.1 | copper homeostasis membrane protein CopD | - |
| JMV10_RS01295 | 257943..258284 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 258312..258583 | - | 272 | - | - | Antitoxin |
| - | 258442..258545 | + | 104 | - | - | Toxin |
| JMV10_RS01300 | 258680..259336 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| JMV10_RS01305 | 259337..259528 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JMV10_RS01310 | 259633..259869 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JMV10_RS01315 | 259987..261426 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T290166 NZ_LR883965:258442-258545 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT290166 NZ_LR883965:c258583-258312 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
