Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2108953..2109224 | Replicon | chromosome |
| Accession | NZ_LR883050 | ||
| Organism | Escherichia coli isolate L1_E925 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2109083..2109186 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2108953..2109224 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JL017_RS10155 | 2105508..2106170 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| JL017_RS10160 | 2106194..2106850 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| JL017_RS10165 | 2106952..2107182 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JL017_RS10170 | 2107321..2107695 | + | 375 | WP_000168746.1 | CopC domain-containing protein YobA | - |
| JL017_RS10175 | 2107699..2108571 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| JL017_RS10180 | 2108584..2108925 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2108953..2109224 | - | 272 | - | - | Antitoxin |
| - | 2109083..2109186 | + | 104 | - | - | Toxin |
| JL017_RS10185 | 2109321..2109977 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| JL017_RS10190 | 2109978..2110169 | - | 192 | WP_001338167.1 | YebW family protein | - |
| JL017_RS10195 | 2110274..2110510 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| JL017_RS10200 | 2110628..2112067 | - | 1440 | WP_001397399.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T290151 NZ_LR883050:2109083-2109186 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT290151 NZ_LR883050:c2109224-2108953 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
