Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2099407..2099678 | Replicon | chromosome |
| Accession | NZ_LR883012 | ||
| Organism | Escherichia coli isolate L4_E1441_ETEC | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2099537..2099640 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2099407..2099678 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JLZ95_RS10085 | 2095962..2096624 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| JLZ95_RS10090 | 2096648..2097304 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| JLZ95_RS10095 | 2097406..2097636 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JLZ95_RS10100 | 2097775..2098149 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JLZ95_RS10105 | 2098153..2099025 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| JLZ95_RS10110 | 2099038..2099379 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2099407..2099678 | - | 272 | - | - | Antitoxin |
| - | 2099537..2099640 | + | 104 | - | - | Toxin |
| JLZ95_RS10115 | 2099775..2100431 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| JLZ95_RS10120 | 2100432..2100623 | - | 192 | WP_001338167.1 | YebW family protein | - |
| JLZ95_RS10125 | 2100728..2100964 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| JLZ95_RS10130 | 2101082..2102521 | - | 1440 | WP_001397399.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T290127 NZ_LR883012:2099537-2099640 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT290127 NZ_LR883012:c2099678-2099407 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
