Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2071176..2071447 | Replicon | chromosome |
| Accession | NZ_LR883006 | ||
| Organism | Escherichia coli isolate L5_E1779_ETEC | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2071306..2071409 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2071176..2071447 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JL014_RS10050 | 2067731..2068393 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JL014_RS10055 | 2068417..2069073 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| JL014_RS10060 | 2069175..2069405 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JL014_RS10065 | 2069544..2069918 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| JL014_RS10070 | 2069922..2070794 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| JL014_RS10075 | 2070807..2071148 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2071176..2071447 | - | 272 | - | - | Antitoxin |
| - | 2071306..2071409 | + | 104 | - | - | Toxin |
| JL014_RS10080 | 2071544..2072200 | + | 657 | WP_000812735.1 | protein-serine/threonine phosphatase | - |
| JL014_RS10085 | 2072201..2072392 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JL014_RS10090 | 2072497..2072733 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JL014_RS10095 | 2072851..2074290 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T290100 NZ_LR883006:2071306-2071409 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT290100 NZ_LR883006:c2071447-2071176 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
