Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) Hha-TomB/-
Location 3633182..3633800 Replicon chromosome
Accession NZ_LR882990
Organism Escherichia coli isolate L7_E1373_ETEC

Toxin (Protein)


Gene name Hha Uniprot ID H5UYE2
Locus tag JLZ97_RS17395 Protein ID WP_001291435.1
Coordinates 3633582..3633800 (+) Length 73 a.a.

Antitoxin (Protein)


Gene name TomB Uniprot ID S1PTH5
Locus tag JLZ97_RS17390 Protein ID WP_000344800.1
Coordinates 3633182..3633556 (+) Length 125 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JLZ97_RS17380 3628271..3629464 + 1194 WP_024171442.1 multidrug efflux RND transporter periplasmic adaptor subunit AcrA -
JLZ97_RS17385 3629487..3632636 + 3150 WP_001132469.1 multidrug efflux RND transporter permease subunit -
JLZ97_RS17390 3633182..3633556 + 375 WP_000344800.1 Hha toxicity modulator TomB Antitoxin
JLZ97_RS17395 3633582..3633800 + 219 WP_001291435.1 hemolysin expression modulator Hha Toxin
JLZ97_RS17400 3633972..3634523 + 552 WP_000102564.1 maltose O-acetyltransferase -
JLZ97_RS17405 3634639..3635109 + 471 WP_000136192.1 YlaC family protein -
JLZ97_RS17410 3635273..3636823 + 1551 WP_001299455.1 cyclic-guanylate-specific phosphodiesterase PdeB -
JLZ97_RS17415 3636865..3637218 - 354 WP_000878140.1 DUF1428 domain-containing protein -
JLZ97_RS17425 3637597..3637908 + 312 WP_000409911.1 MGMT family protein -
JLZ97_RS17430 3637939..3638511 - 573 WP_000779826.1 lipoprotein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Haemolysin expression modulating, HHA

(13-69)

Antitoxin

Biofilm formation regulator YbaJ

(1-117)


Sequences

Toxin        


Download         Length: 73 a.a.        Molecular weight: 8628.00 Da        Isoelectric Point: 8.9008

>T290055 WP_001291435.1 NZ_LR882990:3633582-3633800 [Escherichia coli]
MSEKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPSSVWKFIR

Download         Length: 219 bp

Antitoxin


Download         Length: 125 a.a.        Molecular weight: 14557.39 Da        Isoelectric Point: 4.7395

>AT290055 WP_000344800.1 NZ_LR882990:3633182-3633556 [Escherichia coli]
MDEYSPKRHDIAQLKFLCETLYHDCLANLEESNHGWVNDPTSAINLQLNELIEHIATFALNYKIKYNEDNKLIEQIDEYL
DDTFMLFSSYGINMQDLQKWRKSGNRLFRCFVNATKENPASLSC

Download         Length: 375 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 2MW2
PDB 1JW2

Antitoxin

Source ID Structure
AlphaFold DB A0A7U9QBQ5

References