Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2064063..2064334 | Replicon | chromosome |
| Accession | NZ_LR882990 | ||
| Organism | Escherichia coli isolate L7_E1373_ETEC | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2064193..2064296 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2064063..2064334 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JLZ97_RS09730 | 2060618..2061280 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JLZ97_RS09735 | 2061304..2061960 | - | 657 | WP_001718413.1 | carbon-nitrogen hydrolase family protein | - |
| JLZ97_RS09740 | 2062062..2062292 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JLZ97_RS09745 | 2062431..2062805 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JLZ97_RS09750 | 2062809..2063681 | + | 873 | WP_001718412.1 | copper homeostasis membrane protein CopD | - |
| JLZ97_RS09755 | 2063694..2064035 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2064063..2064334 | - | 272 | - | - | Antitoxin |
| - | 2064193..2064296 | + | 104 | - | - | Toxin |
| JLZ97_RS09760 | 2064431..2065087 | + | 657 | WP_001718411.1 | protein-serine/threonine phosphatase | - |
| JLZ97_RS09765 | 2065088..2065279 | - | 192 | WP_001313035.1 | YebW family protein | - |
| JLZ97_RS09770 | 2065384..2065620 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JLZ97_RS09775 | 2065738..2067177 | - | 1440 | WP_001718410.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T290049 NZ_LR882990:2064193-2064296 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT290049 NZ_LR882990:c2064334-2064063 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
