Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1603212..1603483 | Replicon | chromosome |
| Accession | NC_020518 | ||
| Organism | Escherichia coli str. K-12 substr. MDS42 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1603250..1603353 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1603212..1603483 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECMDS42_RS07770 (ECMDS42_1510) | 1600369..1601808 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ECMDS42_RS07775 (ECMDS42_1511) | 1601926..1602162 | + | 237 | WP_001295499.1 | YebV family protein | - |
| ECMDS42_RS07780 (ECMDS42_1512) | 1602267..1602458 | + | 192 | WP_000457842.1 | YebW family protein | - |
| ECMDS42_RS07785 (ECMDS42_1513) | 1602459..1603115 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1603212..1603483 | + | 272 | - | - | Antitoxin |
| - | 1603250..1603353 | - | 104 | - | - | Toxin |
| ECMDS42_RS07795 (ECMDS42_1516) | 1603511..1603852 | - | 342 | WP_000976476.1 | YebY family protein | - |
| ECMDS42_RS07800 (ECMDS42_1517) | 1603865..1604737 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| ECMDS42_RS07805 (ECMDS42_1518) | 1604741..1605115 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| ECMDS42_RS07810 (ECMDS42_1519) | 1605254..1605484 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ECMDS42_RS07815 (ECMDS42_1520) | 1605586..1606242 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| ECMDS42_RS07820 (ECMDS42_1521) | 1606266..1606928 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T29003 NC_020518:c1603353-1603250 [Escherichia coli str. K-12 substr. MDS42]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT29003 NC_020518:1603212-1603483 [Escherichia coli str. K-12 substr. MDS42]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
