Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2177783..2178054 | Replicon | chromosome |
| Accession | NZ_LR882978 | ||
| Organism | Escherichia coli isolate L3_CS7_E2980 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2177913..2178016 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2177783..2178054 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JLZ94_RS10765 | 2174338..2175000 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JLZ94_RS10770 | 2175024..2175680 | - | 657 | WP_000011669.1 | carbon-nitrogen hydrolase family protein | - |
| JLZ94_RS10775 | 2175782..2176012 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JLZ94_RS10780 | 2176151..2176525 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JLZ94_RS10785 | 2176529..2177401 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| JLZ94_RS10790 | 2177414..2177755 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2177783..2178054 | - | 272 | - | - | Antitoxin |
| - | 2177913..2178016 | + | 104 | - | - | Toxin |
| JLZ94_RS10795 | 2178151..2178807 | + | 657 | WP_000812723.1 | protein-serine/threonine phosphatase | - |
| JLZ94_RS10800 | 2178808..2178999 | - | 192 | WP_001338167.1 | YebW family protein | - |
| JLZ94_RS10805 | 2179104..2179340 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JLZ94_RS10810 | 2179458..2180897 | - | 1440 | WP_001352399.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T290027 NZ_LR882978:2177913-2178016 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT290027 NZ_LR882978:c2178054-2177783 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
