Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) hicAB/HicA-UPF0150
Location 1451982..1452418 Replicon chromosome
Accession NZ_LR882944
Organism Planktothrix agardhii strain No.365

Toxin (Protein)


Gene name hicA Uniprot ID -
Locus tag NMG87_RS06065 Protein ID WP_083624195.1
Coordinates 1451982..1452203 (-) Length 74 a.a.

Antitoxin (Protein)


Gene name hicB Uniprot ID -
Locus tag NMG87_RS06070 Protein ID WP_199918700.1
Coordinates 1452200..1452418 (-) Length 73 a.a.

Genomic Context

NMG87_RS06050NMG87_RS06055NMG87_RS06020NMG87_RS06025NMG87_RS06035NMG87_RS06040NMG87_RS06045NMG87_RS06060NMG87_RS06065NMG87_RS06070NMG87_RS06075NMG87_RS06080NMG87_RS06090
Location: 1450943..1451155 (213 bp)
Type: Others
Protein ID: WP_083622512.1
Location: 1451152..1451538 (387 bp)
Type: Others
Protein ID: WP_227382606.1
Location: 1447292..1448200 (909 bp)
Type: Others
Protein ID: WP_227366019.1
Location: 1448376..1449296 (921 bp)
Type: Others
Protein ID: WP_042153018.1
Location: 1449791..1450006 (216 bp)
Type: Others
Protein ID: WP_042153017.1
Location: 1450119..1450478 (360 bp)
Type: Others
Protein ID: WP_042153014.1
Location: 1450465..1450794 (330 bp)
Type: Others
Protein ID: WP_227350328.1
Location: 1451698..1451916 (219 bp)
Type: Others
Protein ID: WP_254033365.1
Location: 1451982..1452203 (222 bp)
Type: Toxin
Protein ID: WP_083624195.1
Location: 1452200..1452418 (219 bp)
Type: Antitoxin
Protein ID: WP_199918700.1
Location: 1452637..1454448 (1812 bp)
Type: Others
Protein ID: WP_254033366.1
Location: 1454641..1455510 (870 bp)
Type: Others
Protein ID: WP_254033367.1
Location: 1455742..1455942 (201 bp)
Type: Others
Protein ID: WP_235751216.1
ToxinAntitoxinOther genes
Loading, please wait
Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
NMG87_RS06020 (NO365_01220)1447292..1448200-909WP_227366019.1pentapeptide repeat-containing protein-
NMG87_RS06025 (NO365_01221)1448376..1449296-921WP_042153018.1glutaminase A-
NMG87_RS06035 (NO365_01223)1449791..1450006-216WP_042153017.1hypothetical protein-
NMG87_RS06040 (NO365_01224)1450119..1450478-360WP_042153014.1hypothetical protein-
NMG87_RS06045 (NO365_01225)1450465..1450794-330WP_227350328.1type II toxin-antitoxin system RelE/ParE family toxin-
NMG87_RS06050 (NO365_01226)1450943..1451155+213WP_083622512.1hypothetical protein-
NMG87_RS06055 (NO365_01227)1451152..1451538+387WP_227382606.1type II toxin-antitoxin system VapC family toxin-
NMG87_RS06060 (NO365_01228)1451698..1451916-219WP_254033365.1hypothetical protein-
NMG87_RS06065 (NO365_01229)1451982..1452203-222WP_083624195.1type II toxin-antitoxin system HicA family toxinToxin
NMG87_RS06070 (NO365_01230)1452200..1452418-219WP_199918700.1type II toxin-antitoxin system HicB family antitoxinAntitoxin
NMG87_RS06075 (NO365_01231)1452637..1454448-1812WP_254033366.1serine/threonine-protein kinase-
NMG87_RS06080 (NO365_01232)1454641..1455510-870WP_254033367.1lipoyl synthase-
NMG87_RS06090 (NO365_01234)1455742..1455942-201WP_235751216.1hypothetical protein-

Associated MGEs

Loading, please wait
MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

HicA mRNA interferase family

(9-64)

Antitoxin

HicB-like antitoxin of toxin-antitoxin system

(5-65)


Sequences

Toxin        


Download         Length: 74 a.a.        Molecular weight: 8226.64 Da        Isoelectric Point: 10.6668

>T289971 WP_083624195.1 NZ_LR882944:c1452203-1451982 [Planktothrix agardhii]
MSKLPRISGKECVKALEKVGFYLRRQQGSHLILRRNEPLTQVVVPNHSELDKGTLRSIIRGAGLSVDDFIQLL

Download         Length: 222 bp

Antitoxin


Download         Length: 73 a.a.        Molecular weight: 7960.16 Da        Isoelectric Point: 3.8237

>AT289971 WP_199918700.1 NZ_LR882944:c1452418-1452200 [Planktothrix agardhii]
MIRRVTIYSGEDGYWVVECPSLPGCVSQGKTQEEALINIKEAIQGYILALEEDGLPVPLENVETLENLLLVV

Download         Length: 219 bp


Similar Proteins

Only experimentally validated proteins are listed.

Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

Loading, please wait
Source
ID
Structure
No matching records found

Antitoxin

Loading, please wait
Source
ID
Structure
No matching records found

References