Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN-PHD
Location 258956..259612 Replicon chromosome
Accession NZ_LR882944
Organism Planktothrix agardhii strain No.365

Toxin (Protein)


Gene name vapC Uniprot ID A0A4P5ZG20
Locus tag NMG87_RS01090 Protein ID WP_026798539.1
Coordinates 259214..259612 (+) Length 133 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID A0A1J1J9N3
Locus tag NMG87_RS01085 Protein ID WP_026795934.1
Coordinates 258956..259201 (+) Length 82 a.a.

Genomic Context

NMG87_RS01045NMG87_RS01050NMG87_RS01055NMG87_RS01065NMG87_RS01085NMG87_RS01090NMG87_RS01110NMG87_RS01060NMG87_RS01070NMG87_RS01075NMG87_RS01080NMG87_RS01095NMG87_RS01100NMG87_RS01105NMG87_RS01115NMG87_RS01120NMG87_RS01125
Location: 254629..255324 (696 bp)
Type: Others
Protein ID: WP_026785406.1
Location: 255497..256060 (564 bp)
Type: Others
Protein ID: WP_227350526.1
Location: 256717..256932 (216 bp)
Type: Others
Protein ID: WP_036831945.1
Location: 257501..257821 (321 bp)
Type: Others
Protein ID: WP_237157247.1
Location: 258956..259201 (246 bp)
Type: Antitoxin
Protein ID: WP_026795934.1
Location: 259214..259612 (399 bp)
Type: Toxin
Protein ID: WP_026798539.1
Location: 261434..262819 (1386 bp)
Type: Others
Protein ID: WP_254033173.1
Location: 257075..257230 (156 bp)
Type: Others
Protein ID: WP_254033171.1
Location: 257828..258052 (225 bp)
Type: Others
Protein ID: WP_235751406.1
Location: 258119..258523 (405 bp)
Type: Others
Protein ID: WP_026785412.1
Location: 258526..258774 (249 bp)
Type: Others
Protein ID: WP_036831938.1
Location: 259769..260152 (384 bp)
Type: Others
Protein ID: WP_026785416.1
Location: 260145..260387 (243 bp)
Type: Others
Protein ID: WP_254033172.1
Location: 260627..261220 (594 bp)
Type: Others
Protein ID: WP_027255350.1
Location: 262850..263236 (387 bp)
Type: Others
Protein ID: WP_227365720.1
Location: 263238..263480 (243 bp)
Type: Others
Protein ID: WP_227365722.1
Location: 263711..264604 (894 bp)
Type: Others
Protein ID: WP_254033174.1
ToxinAntitoxinOther genes
Loading, please wait
Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
NMG87_RS01045 (NO365_00219)254629..255324+696WP_026785406.1response regulator transcription factor-
NMG87_RS01050 (NO365_00220)255497..256060+564WP_227350526.1DUF192 domain-containing protein-
NMG87_RS01055 (NO365_00221)256717..256932+216WP_036831945.1DUF2949 domain-containing protein-
NMG87_RS01060257075..257230-156WP_254033171.1hypothetical protein-
NMG87_RS01065 (NO365_00224)257501..257821+321WP_237157247.1type II toxin-antitoxin system VapC family toxin-
NMG87_RS01070257828..258052-225WP_235751406.1hypothetical protein-
NMG87_RS01075 (NO365_00226)258119..258523-405WP_026785412.1PIN domain-containing protein-
NMG87_RS01080 (NO365_00227)258526..258774-249WP_036831938.1AbrB/MazE/SpoVT family DNA-binding domain-containing protein-
NMG87_RS01085 (NO365_00228)258956..259201+246WP_026795934.1type II toxin-antitoxin system prevent-host-death family antitoxinAntitoxin
NMG87_RS01090 (NO365_00229)259214..259612+399WP_026798539.1type II toxin-antitoxin system VapC family toxinToxin
NMG87_RS01095 (NO365_00230)259769..260152-384WP_026785416.1type II toxin-antitoxin system VapC family toxin-
NMG87_RS01100 (NO365_00231)260145..260387-243WP_254033172.1hypothetical protein-
NMG87_RS01105 (NO365_00232)260627..261220-594WP_027255350.1hypothetical protein-
NMG87_RS01110 (NO365_00233)261434..262819+1386WP_254033173.1NB-ARC domain-containing protein-
NMG87_RS01115 (NO365_00234)262850..263236-387WP_227365720.1type II toxin-antitoxin system VapC family toxin-
NMG87_RS01120 (NO365_00235)263238..263480-243WP_227365722.1hypothetical protein-
NMG87_RS01125 (NO365_00236)263711..264604-894WP_254033174.1acetylglutamate kinase-

Associated MGEs

Loading, please wait
MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

VapC-like Sll0205 protein, PIN domain

(4-129)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(11-45)


Sequences

Toxin        


Download         Length: 133 a.a.        Molecular weight: 15305.73 Da        Isoelectric Point: 5.1406

>T289970 WP_026798539.1 NZ_LR882944:259214-259612 [Planktothrix agardhii]
VKLLLDTQCWLWWFAQPERLNQEVIAQIADESNELWFSVASVWEIGIKVAIRKLPLPEPIDTYISSRMVQLDMRYLEIKA
PHALRSSALPLHHRDPFDRMLIAQAQIENMTLVSADSIFKQYSDISVLWAAN

Download         Length: 399 bp

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 9077.41 Da        Isoelectric Point: 4.5358

>AT289970 WP_026795934.1 NZ_LR882944:258956-259201 [Planktothrix agardhii]
MAKLQIENLPNDFKKNLSELLSRVELGEEIIISNQGVAIAKLIPFRPSSNRRASLGQDQGKFIIPDDFNEPLPQEILAAF
E

Download         Length: 246 bp


Similar Proteins

Only experimentally validated proteins are listed.

Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

Loading, please wait
Source
ID
Structure
AlphaFold DBA0A4P5ZG20

Antitoxin

Loading, please wait
Source
ID
Structure
AlphaFold DBA0A1J1J9N3

References