Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | parDE/- |
Location | 2408196..2408725 | Replicon | chromosome |
Accession | NZ_LR882500 | ||
Organism | Mycobacterium tuberculosis variant microti strain 94-2272 isolate human |
Toxin (Protein)
Gene name | parE | Uniprot ID | G0TMR4 |
Locus tag | JOA04_RS11100 | Protein ID | WP_003411124.1 |
Coordinates | 2408196..2408513 (-) | Length | 106 a.a. |
Antitoxin (Protein)
Gene name | parD | Uniprot ID | P9WJ74 |
Locus tag | JOA04_RS11105 | Protein ID | WP_003411127.1 |
Coordinates | 2408510..2408725 (-) | Length | 72 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
JOA04_RS11070 | 2403217..2404293 | + | 1077 | WP_003411110.1 | hypothetical protein | - |
JOA04_RS11075 | 2404290..2404571 | + | 282 | WP_055377560.1 | hypothetical protein | - |
JOA04_RS11080 | 2404607..2405680 | + | 1074 | WP_003411116.1 | quinone-dependent dihydroorotate dehydrogenase | - |
JOA04_RS11085 | 2405685..2406215 | - | 531 | WP_003411119.1 | YbhB/YbcL family Raf kinase inhibitor-like protein | - |
JOA04_RS11090 | 2406263..2407609 | - | 1347 | WP_105799941.1 | M20/M25/M40 family metallo-hydrolase | - |
JOA04_RS11100 | 2408196..2408513 | - | 318 | WP_003411124.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
JOA04_RS11105 | 2408510..2408725 | - | 216 | WP_003411127.1 | antitoxin ParD2 | Antitoxin |
JOA04_RS11110 | 2408980..2410038 | + | 1059 | WP_003411129.1 | hypothetical protein | - |
JOA04_RS11115 | 2410168..2410524 | - | 357 | WP_003411130.1 | hypothetical protein | - |
JOA04_RS11120 | 2410619..2411401 | - | 783 | WP_003411131.1 | cell wall synthesis protein Wag31 | - |
JOA04_RS11125 | 2411669..2411959 | - | 291 | WP_003900476.1 | YggT family protein | - |
JOA04_RS11130 | 2412121..2412777 | - | 657 | WP_003411133.1 | cell division protein SepF | - |
JOA04_RS11135 | 2412843..2413619 | - | 777 | WP_003411137.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 106 a.a. Molecular weight: 12312.88 Da Isoelectric Point: 6.4831
>T289940 WP_003411124.1 NZ_LR882500:c2408513-2408196 [Mycobacterium tuberculosis variant microti]
MTRRLRVHNGVEDDLFEAFSYYADAAPDQIDRLYNLFVDAVTKRIPQAPNAFAPLFKHYRHIYLRPFRYYVAYRTTDEAI
DILAVRHGMENPNAVEAEISGRTFE
MTRRLRVHNGVEDDLFEAFSYYADAAPDQIDRLYNLFVDAVTKRIPQAPNAFAPLFKHYRHIYLRPFRYYVAYRTTDEAI
DILAVRHGMENPNAVEAEISGRTFE
Download Length: 318 bp
Antitoxin
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | G0TMR4 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A7U4FAJ4 |