Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN(toxin)
Location 843678..844387 Replicon chromosome
Accession NZ_LR882500
Organism Mycobacterium tuberculosis variant microti strain 94-2272 isolate human

Toxin (Protein)


Gene name vapC Uniprot ID P9WF74
Locus tag JOA04_RS03945 Protein ID WP_003403837.1
Coordinates 843959..844387 (+) Length 143 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID G0TEX4
Locus tag JOA04_RS03940 Protein ID WP_003403834.1
Coordinates 843678..843935 (+) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JOA04_RS03930 840787..841965 + 1179 Protein_776 PE family protein -
JOA04_RS03935 841998..843587 + 1590 Protein_777 PE family protein -
JOA04_RS03940 843678..843935 + 258 WP_003403834.1 ribbon-helix-helix protein, CopG family Antitoxin
JOA04_RS03945 843959..844387 + 429 WP_003403837.1 type II toxin-antitoxin system VapC family toxin Toxin
JOA04_RS03950 844477..844651 - 175 Protein_780 transposase -
JOA04_RS03955 844764..845009 + 246 WP_003403841.1 hypothetical protein -
JOA04_RS03960 845078..845962 - 885 WP_003403844.1 3-hydroxyisobutyrate dehydrogenase -
JOA04_RS03965 845973..847145 - 1173 WP_003403845.1 acyl-CoA dehydrogenase FadE9 -
JOA04_RS03970 847152..848684 - 1533 WP_003403847.1 CoA-acylating methylmalonate-semialdehyde dehydrogenase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain toxin

(1-141)

Antitoxin

Ribbon-helix-helix protein, CopG

(2-36)


Sequences

Toxin        


Download         Length: 143 a.a.        Molecular weight: 15831.27 Da        Isoelectric Point: 7.5536

>T289916 WP_003403837.1 NZ_LR882500:843959-844387 [Mycobacterium tuberculosis variant microti]
MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIPSPRAEAFAFVEAVTAQPHHL
PTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHCAVVSLDRDFARFASVRHIRPPL

Download         Length: 429 bp

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9114.28 Da        Isoelectric Point: 10.6530

>AT289916 WP_003403834.1 NZ_LR882500:843678-843935 [Mycobacterium tuberculosis variant microti]
MRTTVSISDEILAAAKRRARERGQSLGAVIEDALRREFAAAHVGGARPTVPVFDGGTGPRRGIDLTSNRALSEVLDEGLE
LNSRK

Download         Length: 258 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A829CDR3

Antitoxin

Source ID Structure
AlphaFold DB G0TEX4

References