289894

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN(toxin)
Location 3172134..3172821 Replicon chromosome
Accession NZ_LR882499
Organism Mycobacterium tuberculosis variant microti OV254 isolate vole

Toxin (Protein)


Gene name vapC Uniprot ID P65044
Locus tag JN986_RS14900 Protein ID WP_003414624.1
Coordinates 3172378..3172821 (+) Length 148 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID G0TFH0
Locus tag JN986_RS14895 Protein ID WP_003414620.1
Coordinates 3172134..3172391 (+) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JN986_RS14875 3167454..3168308 - 855 WP_003899516.1 GNAT family N-acetyltransferase -
JN986_RS14880 3168364..3169527 - 1164 WP_003899517.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
JN986_RS14885 3169544..3170758 - 1215 WP_003414610.1 zinc metalloprotease Rip -
JN986_RS14890 3170766..3172007 - 1242 WP_003414613.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
JN986_RS14895 3172134..3172391 + 258 WP_003414620.1 ribbon-helix-helix domain-containing protein Antitoxin
JN986_RS14900 3172378..3172821 + 444 WP_003414624.1 type II toxin-antitoxin system VapC family toxin Toxin
JN986_RS14905 3172901..3173563 + 663 WP_003414630.1 cell surface glycolipoprotein Mpt83 -
JN986_RS14910 3173659..3173850 + 192 WP_105799616.1 type II toxin-antitoxin system prevent-host-death family antitoxin -
JN986_RS14915 3174182..3175930 + 1749 WP_003912869.1 cytochrome c biogenesis protein DipZ -
JN986_RS14920 3176026..3176607 + 582 WP_003414644.1 fasciclin domain-containing protein -
JN986_RS14925 3176707..3176973 + 267 WP_031652375.1 DUF2631 domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain toxin

(1-142)

Antitoxin

Ribbon-helix-helix protein, CopG

(2-38)


Sequences

Toxin        


Download         Length: 148 a.a.        Molecular weight: 16595.72 Da        Isoelectric Point: 6.4890

>T289894 WP_003414624.1 NZ_LR882499:3172378-3172821 [Mycobacterium tuberculosis variant microti OV254]
MLCVDVNVLVYAHRADLREHADYRGLLERLANDDEPLGLPDSVLAGFIRVVTNRRVFTEPTSPQDAWQAVDALLAAPAAM
RLRPGERHWMAFRQLASDVDANGNDIADAHLAAYALENNATWLSADRGFARFRRLRWRHPLDGQTHL

Download         Length: 444 bp

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9013.22 Da        Isoelectric Point: 10.8344

>AT289894 WP_003414620.1 NZ_LR882499:3172134-3172391 [Mycobacterium tuberculosis variant microti OV254]
VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLRPGVDLSSNAALAEAMNDGVS
VDAVR

Download         Length: 258 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 7VWO

Antitoxin

Source ID Structure
AlphaFold DB G0TFH0

References