289881

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN(toxin)
Location 2804127..2804779 Replicon chromosome
Accession NZ_LR882499
Organism Mycobacterium tuberculosis variant microti OV254 isolate vole

Toxin (Protein)


Gene name vapC Uniprot ID G0TPX1
Locus tag JN986_RS12935 Protein ID WP_003412752.1
Coordinates 2804354..2804779 (+) Length 142 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID P9WJ24
Locus tag JN986_RS12930 Protein ID WP_003412749.1
Coordinates 2804127..2804348 (+) Length 74 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JN986_RS12915 2802367..2802573 - 207 WP_003899347.1 hypothetical protein -
JN986_RS12920 2802709..2803332 + 624 WP_003900858.1 TIGR00725 family protein -
JN986_RS12925 2803322..2804074 + 753 WP_105799954.1 hypothetical protein -
JN986_RS12930 2804127..2804348 + 222 WP_003412749.1 antitoxin Antitoxin
JN986_RS12935 2804354..2804779 + 426 WP_003412752.1 type II toxin-antitoxin system VapC family toxin Toxin
JN986_RS12940 2804802..2805983 - 1182 WP_003899351.1 2-oxo acid dehydrogenase subunit E2 -
JN986_RS12945 2805980..2807026 - 1047 WP_003412757.1 3-methyl-2-oxobutanoate dehydrogenase subunit beta -
JN986_RS12950 2807037..2808140 - 1104 WP_003412761.1 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha -
JN986_RS12955 2808399..2809220 - 822 WP_003412766.1 citrate (pro-3S)-lyase subunit beta -
JN986_RS12960 2809217..2809774 - 558 WP_003412768.1 MaoC family dehydratase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(3-121)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 142 a.a.        Molecular weight: 15392.89 Da        Isoelectric Point: 9.2386

>T289881 WP_003412752.1 NZ_LR882499:2804354-2804779 [Mycobacterium tuberculosis variant microti OV254]
VALLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIGIADARRVLVALRAVGGHRFL
ADDVSLVDDDVPLIVGYRQVTDAHLLTLARRRGVRLVTFDAGVFTLAQQRPKTPVELLTIL

Download         Length: 426 bp

Antitoxin


Download         Length: 74 a.a.        Molecular weight: 7864.93 Da        Isoelectric Point: 4.5258

>AT289881 WP_003412749.1 NZ_LR882499:2804127-2804348 [Mycobacterium tuberculosis variant microti OV254]
VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRVEADDGLPVIRVPAGTPPITPEMVRRALDED

Download         Length: 222 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB G0TPX1

Antitoxin

Source ID Structure
AlphaFold DB A0A7U4BW03

References