289880

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/-
Location 2407086..2407615 Replicon chromosome
Accession NZ_LR882499
Organism Mycobacterium tuberculosis variant microti OV254 isolate vole

Toxin (Protein)


Gene name parE Uniprot ID G0TMR4
Locus tag JN986_RS11075 Protein ID WP_003411124.1
Coordinates 2407086..2407403 (-) Length 106 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID P9WJ74
Locus tag JN986_RS11080 Protein ID WP_003411127.1
Coordinates 2407400..2407615 (-) Length 72 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JN986_RS11045 2402107..2403183 + 1077 WP_003411110.1 hypothetical protein -
JN986_RS11050 2403180..2403461 + 282 WP_055377560.1 hypothetical protein -
JN986_RS11055 2403497..2404570 + 1074 WP_003411116.1 quinone-dependent dihydroorotate dehydrogenase -
JN986_RS11060 2404575..2405105 - 531 WP_003411119.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
JN986_RS11065 2405153..2406499 - 1347 WP_105799941.1 M20/M25/M40 family metallo-hydrolase -
JN986_RS11075 2407086..2407403 - 318 WP_003411124.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
JN986_RS11080 2407400..2407615 - 216 WP_003411127.1 antitoxin ParD2 Antitoxin
JN986_RS11085 2407870..2408928 + 1059 WP_003411129.1 hypothetical protein -
JN986_RS11090 2409058..2409414 - 357 WP_003411130.1 hypothetical protein -
JN986_RS11095 2409509..2410291 - 783 WP_003411131.1 cell wall synthesis protein Wag31 -
JN986_RS11100 2410559..2410849 - 291 WP_003900476.1 YggT family protein -
JN986_RS11105 2411011..2411667 - 657 WP_003411133.1 cell division protein SepF -
JN986_RS11110 2411733..2412509 - 777 WP_003411137.1 YggS family pyridoxal phosphate-dependent enzyme -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-92)

Antitoxin

Conserved hypothetical protein CHP02574, addiction module

(11-69)


Sequences

Toxin        


Download         Length: 106 a.a.        Molecular weight: 12312.88 Da        Isoelectric Point: 6.4831

>T289880 WP_003411124.1 NZ_LR882499:c2407403-2407086 [Mycobacterium tuberculosis variant microti OV254]
MTRRLRVHNGVEDDLFEAFSYYADAAPDQIDRLYNLFVDAVTKRIPQAPNAFAPLFKHYRHIYLRPFRYYVAYRTTDEAI
DILAVRHGMENPNAVEAEISGRTFE

Download         Length: 318 bp

>T289880 NZ_LR882499:c2407403-2407086 [Mycobacterium tuberculosis variant microti OV254]
ATGACGCGCAGGCTGCGCGTCCATAACGGGGTTGAAGACGACCTATTCGAGGCGTTTTCCTACTACGCGGACGCGGCGCC
AGATCAGATCGATCGGCTTTACAACTTGTTTGTCGATGCCGTGACGAAGCGGATTCCGCAGGCTCCGAACGCGTTTGCGC
CGTTATTCAAGCACTATCGACACATCTACCTCCGGCCCTTCAGGTACTACGTTGCCTATCGGACGACCGACGAGGCTATC
GACATACTGGCTGTTCGGCACGGAATGGAGAACCCGAACGCGGTCGAGGCTGAGATCTCTGGCCGCACCTTCGAGTGA

Antitoxin


Download         Length: 72 a.a.        Molecular weight: 7880.70 Da        Isoelectric Point: 4.4055

>AT289880 WP_003411127.1 NZ_LR882499:c2407615-2407400 [Mycobacterium tuberculosis variant microti OV254]
VVVNRALLASVDALSRDEQIELVEHINGNLAEGMHISEANQALIEARANDTDDAHWSTIDDFDKRIRARLG

Download         Length: 216 bp

>AT289880 NZ_LR882499:c2407615-2407400 [Mycobacterium tuberculosis variant microti OV254]
GTGGTGGTCAACCGGGCATTGCTGGCGAGCGTCGACGCACTGTCGCGTGATGAGCAGATTGAGCTCGTCGAGCACATCAA
CGGAAACCTAGCCGAGGGCATGCATATCAGCGAGGCCAACCAGGCGCTCATCGAAGCGCGGGCCAATGACACCGACGATG
CTCATTGGTCCACCATTGATGACTTCGACAAGCGGATCCGCGCCCGGCTCGGATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB G0TMR4

Antitoxin

Source ID Structure
AlphaFold DB A0A7U4FAJ4

References