289826

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN(toxin)
Location 2931518..2932232 Replicon chromosome
Accession NZ_LR882498
Organism Mycobacterium tuberculosis variant microti strain Maus III isolate human

Toxin (Protein)


Gene name vapC Uniprot ID G0TQK0
Locus tag JN980_RS13525 Protein ID WP_003413460.1
Coordinates 2931792..2932232 (+) Length 147 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID P9WJ20
Locus tag JN980_RS13520 Protein ID WP_003413456.1
Coordinates 2931518..2931805 (+) Length 96 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JN980_RS13485 2926940..2927185 + 246 WP_003413429.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein -
JN980_RS13490 2927182..2927586 + 405 WP_003413432.1 type II toxin-antitoxin system VapC family toxin -
JN980_RS13495 2927803..2928423 + 621 WP_003413441.1 DUF4178 domain-containing protein -
JN980_RS13500 2928434..2928928 + 495 WP_003413444.1 DUF2617 family protein -
JN980_RS13505 2928925..2929356 + 432 WP_003413445.1 DUF4247 domain-containing protein -
JN980_RS13510 2929381..2929839 + 459 WP_193441927.1 DUF350 domain-containing protein -
JN980_RS13515 2929836..2931407 + 1572 WP_003899392.1 polyamine aminopropyltransferase -
JN980_RS13520 2931518..2931805 + 288 WP_003413456.1 antitoxin VapB41 Antitoxin
JN980_RS13525 2931792..2932232 + 441 WP_003413460.1 type II toxin-antitoxin system VapC family toxin Toxin
JN980_RS13530 2932253..2933008 - 756 WP_003413464.1 YebC/PmpR family DNA-binding transcriptional regulator -
JN980_RS13535 2933141..2933737 - 597 WP_003413465.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
JN980_RS13540 2933745..2934590 - 846 WP_003413466.1 acyl-CoA thioesterase II -
JN980_RS13545 2934619..2935518 - 900 WP_003413468.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
JN980_RS13550 2935646..2936320 + 675 WP_003413471.1 pyridoxamine 5'-phosphate oxidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain toxin

(1-146)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 147 a.a.        Molecular weight: 16026.38 Da        Isoelectric Point: 6.8599

>T289826 WP_003413460.1 NZ_LR882498:2931792-2932232 [Mycobacterium tuberculosis variant microti]
MLLCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYGSPPLTNREAWAAYAAFLDDD
RIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAFALTGGFELVTTDTAFTQYGGIELRLLAK

Download         Length: 441 bp

Antitoxin


Download         Length: 96 a.a.        Molecular weight: 10453.98 Da        Isoelectric Point: 7.2797

>AT289826 WP_003413456.1 NZ_LR882498:2931518-2931805 [Mycobacterium tuberculosis variant microti]
MKTTLDLPDELMRAIKVRAAQQGRKMKDVVTELLRSGLSQTHSGAPIPTPRRVQLPLVHCGGAATREQEMTPERVAAALL
DQEAQWWSGHDDAAL

Download         Length: 288 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB G0TQK0

Antitoxin

Source ID Structure
AlphaFold DB A0A7U4BWB8

References