289825

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN(toxin)
Location 2871152..2871789 Replicon chromosome
Accession NZ_LR882498
Organism Mycobacterium tuberculosis variant microti strain Maus III isolate human

Toxin (Protein)


Gene name vapC Uniprot ID P0DMV7
Locus tag JN980_RS13260 Protein ID WP_003413180.1
Coordinates 2871152..2871547 (-) Length 132 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID P9WJ44
Locus tag JN980_RS13265 Protein ID WP_003413183.1
Coordinates 2871544..2871789 (-) Length 82 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JN980_RS13220 2866555..2867766 + 1212 WP_003900845.1 alpha/beta hydrolase family protein -
JN980_RS13225 2867893..2868552 + 660 WP_031719937.1 LppA family lipoprotein -
JN980_RS13230 2868549..2869211 + 663 WP_052624433.1 hypothetical protein -
JN980_RS13235 2869208..2869486 + 279 WP_003901422.1 type II toxin-antitoxin system VapB family antitoxin -
JN980_RS13240 2869579..2869992 + 414 WP_003413164.1 PIN domain nuclease -
JN980_RS13245 2870031..2870288 + 258 WP_003413167.1 ribbon-helix-helix domain-containing protein -
JN980_RS13250 2870285..2870662 + 378 WP_003413174.1 type II toxin-antitoxin system VapC family toxin -
JN980_RS13255 2870678..2871052 - 375 WP_003413177.1 hypothetical protein -
JN980_RS13260 2871152..2871547 - 396 WP_003413180.1 type II toxin-antitoxin system toxin 23S rRNA-specific endonuclease VapC20 Toxin
JN980_RS13265 2871544..2871789 - 246 WP_003413183.1 type II toxin-antitoxin system antitoxin VapB20 Antitoxin
JN980_RS13270 2872200..2872619 - 420 WP_003413190.1 A24 family peptidase -
JN980_RS13275 2872631..2873440 - 810 WP_003413193.1 shikimate dehydrogenase -
JN980_RS13280 2873437..2874705 - 1269 WP_202582048.1 endolytic transglycosylase MltG -
JN980_RS13285 2874698..2875210 - 513 WP_003413197.1 Holliday junction resolvase RuvX -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Endonuclease VapC20-like

(1-129)

Antitoxin

Ribbon-helix-helix protein, CopG

(11-49)


Sequences

Toxin        


Download         Length: 132 a.a.        Molecular weight: 14619.53 Da        Isoelectric Point: 6.9794

>T289825 WP_003413180.1 NZ_LR882498:c2871547-2871152 [Mycobacterium tuberculosis variant microti]
MIFVDTSFWAALGNAGDARHGTAKRLWASKPPVVMTSNHVLGETWTLLNRRCGHRAAVAAAAIRLSTVVRVEHVTADLEE
QAWEWLVRHDEREYSFVDATSFAVMRKKGIQNAYAFDGDFSAAGFVEVRPE

Download         Length: 396 bp

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 9098.33 Da        Isoelectric Point: 5.6007

>AT289825 WP_003413183.1 NZ_LR882498:c2871789-2871544 [Mycobacterium tuberculosis variant microti]
MLVAYICHVKRLQIYIDEDVDRALAVEARRRRTSKAALIREYVAEHLRQPGPDPVDAFVGSFVGEADLSASVDDVVYGKH
E

Download         Length: 246 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 5WZ4
PDB 5WZF

Antitoxin

Source ID Structure
AlphaFold DB A0A7U4BW31

References