289794

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapC-mazE/PIN(toxin)
Location 756996..757788 Replicon chromosome
Accession NZ_LR882498
Organism Mycobacterium tuberculosis variant microti strain Maus III isolate human

Toxin (Protein)


Gene name vapC Uniprot ID P9WFB2
Locus tag JN980_RS03460 Protein ID WP_003403386.1
Coordinates 757351..757788 (-) Length 146 a.a.

Antitoxin (Protein)


Gene name mazE Uniprot ID G0TQE0
Locus tag JN980_RS03455 Protein ID WP_003403381.1
Coordinates 756996..757241 (-) Length 82 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JN980_RS03425 752016..753521 + 1506 WP_003403360.1 carotenoid cleavage oxygenase -
JN980_RS03430 753602..754612 + 1011 WP_003911248.1 ABC transporter ATP-binding protein -
JN980_RS03435 755000..755383 - 384 WP_003403365.1 ribonuclease VapC6 -
JN980_RS03440 755478..755633 - 156 WP_003403368.1 type II toxin-antitoxin system VapB family antitoxin -
JN980_RS03445 755709..756425 - 717 WP_003403371.1 CPBP family intramembrane metalloprotease -
JN980_RS03450 756701..757009 - 309 WP_003403376.1 type II toxin-antitoxin system PemK/MazF family toxin -
JN980_RS03455 756996..757241 - 246 WP_003403381.1 ribbon-helix-helix protein, CopG family Antitoxin
JN980_RS03460 757351..757788 - 438 WP_003403386.1 type II toxin-antitoxin system VapC family toxin Toxin
JN980_RS03465 757785..758039 - 255 WP_003911263.1 antitoxin VapB7 -
JN980_RS03470 758153..760516 + 2364 WP_003403397.1 arylsulfatase AtsD -
JN980_RS03475 760579..760905 + 327 WP_003403401.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
JN980_RS03480 760817..761155 + 339 WP_003403405.1 PIN domain-containing protein -
JN980_RS03485 761152..761325 + 174 WP_003898549.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(2-126)

Antitoxin

Ribbon-helix-helix protein, CopG

(2-38)


Sequences

Toxin        


Download         Length: 146 a.a.        Molecular weight: 15245.39 Da        Isoelectric Point: 5.1865

>T289794 WP_003403386.1 NZ_LR882498:c757788-757351 [Mycobacterium tuberculosis variant microti]
MIVLDTTVLVYAKGAEHPLRDPCRDLVAAIADERIAATTTAEVIQEFVHVRARRRDRSDAAALGRVTMPNCSRRYSPSIE
ATSKRGLTLFETTPGLEACDAVLAAVAASAGATALVSADPAFADLSDVVHVIPDAAGMVSLLGDR

Download         Length: 438 bp

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 9169.01 Da        Isoelectric Point: 4.2070

>AT289794 WP_003403381.1 NZ_LR882498:c757241-756996 [Mycobacterium tuberculosis variant microti]
MLSFRADDHDVDLADAWARRLHIGRSELLRDALRRHLAALAADQDVQAYTERPLTDDENALAEIADWGPAEDWADWADAA
R

Download         Length: 246 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U4BSW5

Antitoxin

Source ID Structure
AlphaFold DB G0TQE0

References