289716

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN(toxin)
Location 3696665..3697339 Replicon chromosome
Accession NZ_LR882496
Organism Mycobacterium tuberculosis variant microti strain ATCC 35782 isolate vole

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag JN993_RS17250 Protein ID WP_105799814.1
Coordinates 3696665..3697093 (-) Length 143 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID G0TI59
Locus tag JN993_RS17255 Protein ID WP_003417286.1
Coordinates 3697097..3697339 (-) Length 81 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JN993_RS17225 3692487..3692888 - 402 WP_003417264.1 cytidine deaminase -
JN993_RS17230 3693029..3693463 + 435 WP_003900017.1 succinate dehydrogenase, cytochrome b556 subunit -
JN993_RS17235 3693460..3693894 + 435 WP_003417269.1 succinate dehydrogenase hydrophobic membrane anchor subunit -
JN993_RS17240 3694023..3695795 + 1773 WP_003417273.1 succinate dehydrogenase flavoprotein subunit -
JN993_RS17245 3695795..3696586 + 792 WP_003417279.1 succinate dehydrogenase iron-sulfur subunit -
JN993_RS17250 3696665..3697093 - 429 WP_105799814.1 type II toxin-antitoxin system VapC family toxin Toxin
JN993_RS17255 3697097..3697339 - 243 WP_003417286.1 ribbon-helix-helix domain-containing protein Antitoxin
JN993_RS17260 3697461..3698075 - 615 WP_003417288.1 class I SAM-dependent methyltransferase -
JN993_RS17265 3698072..3698737 - 666 WP_003417290.1 molybdopterin converting factor subunit 1 -
JN993_RS17270 3698738..3699271 - 534 WP_003417293.1 cyclic pyranopterin monophosphate synthase MoaC -
JN993_RS17275 3699268..3699642 - 375 WP_003417295.1 4a-hydroxytetrahydrobiopterin dehydratase -
JN993_RS17280 3699739..3700803 - 1065 WP_003913037.1 GTP 3',8-cyclase MoaA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(4-127)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 143 a.a.        Molecular weight: 15751.08 Da        Isoelectric Point: 8.3191

>T289716 WP_105799814.1 NZ_LR882496:c3697093-3696665 [Mycobacterium tuberculosis variant microti]
MRALLDVNVLLALLDRDHVDHERARAWITGQIERGCASCAITQNGFVRVISQPRYPSPISVAHAIDLLARATHTRYHEFW
SCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFVTFDQSIALTAVPGATKQHLATL

Download         Length: 429 bp

Antitoxin


Download         Length: 81 a.a.        Molecular weight: 8849.86 Da        Isoelectric Point: 5.1007

>AT289716 WP_003417286.1 NZ_LR882496:c3697339-3697097 [Mycobacterium tuberculosis variant microti]
MRTTLSIDDDVLLAVKERARREKRTAGEILSDLARQALTNQNPQPAASQEDAFHGFEPLPHRGGAVSNALIDRLRDEEAV

Download         Length: 243 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure
AlphaFold DB G0TI59

References