289693

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC(toxin)
Location 2217736..2218424 Replicon chromosome
Accession NZ_LR882496
Organism Mycobacterium tuberculosis variant microti strain ATCC 35782 isolate vole

Toxin (Protein)


Gene name vapC Uniprot ID P0A653
Locus tag JN993_RS10215 Protein ID WP_003409958.1
Coordinates 2217736..2218155 (-) Length 140 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID P9WJ28
Locus tag JN993_RS10220 Protein ID WP_003409968.1
Coordinates 2218164..2218424 (-) Length 87 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JN993_RS10190 2212740..2213045 + 306 Protein_2013 ABC transporter permease -
JN993_RS10195 2213229..2214079 + 851 Protein_2014 class I SAM-dependent methyltransferase -
JN993_RS10200 2214042..2215487 - 1446 WP_003409946.1 APC family permease -
JN993_RS10205 2215666..2216352 - 687 WP_003409954.1 immunoprotective protein Mpt64 -
JN993_RS10210 2216543..2217511 - 969 WP_003409956.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
JN993_RS10215 2217736..2218155 - 420 WP_003409958.1 type II toxin-antitoxin system VapC family toxin Toxin
JN993_RS10220 2218164..2218424 - 261 WP_003409968.1 type II toxin-antitoxin system VapB family antitoxin Antitoxin
JN993_RS10225 2218567..2220243 + 1677 WP_003899118.1 PecA family PE domain-processing aspartic protease -
JN993_RS10230 2220231..2220884 - 654 WP_003409976.1 cutinase Cfp21 -
JN993_RS10235 2220999..2221229 + 231 WP_003409980.1 DUF167 domain-containing protein -
JN993_RS10240 2221314..2222225 - 912 WP_003409986.1 ArgP/LysG family DNA-binding transcriptional regulator -
JN993_RS10245 2222334..2222933 + 600 WP_003409989.1 L-lysine exporter -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(1-125)

Antitoxin

Antitoxin VapB-like

(2-81)


Sequences

Toxin        


Download         Length: 140 a.a.        Molecular weight: 14724.89 Da        Isoelectric Point: 7.9535

>T289693 WP_003409958.1 NZ_LR882496:c2218155-2217736 [Mycobacterium tuberculosis variant microti]
MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFERLRSEIGLSVSSFTAEHAAAT
QRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGNDFPQTDLEFRGVVGYWPGVA

Download         Length: 420 bp

Antitoxin


Download         Length: 87 a.a.        Molecular weight: 9528.88 Da        Isoelectric Point: 5.1007

>AT289693 WP_003409968.1 NZ_LR882496:c2218424-2218164 [Mycobacterium tuberculosis variant microti]
VALNIKDPEVDRLAAELADRLHTSKTAAIRHALSAQLAFLESRAGDREAQLLDILRTEIWPLLADRSPITKLEREQILGY
DPATGV

Download         Length: 261 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A829C4H9

Antitoxin

Source ID Structure
AlphaFold DB A0A829C483

References