Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) chpSB/PRK09812-ChpS
Location 4246449..4247044 Replicon chromosome
Accession NZ_LR882493
Organism Escherichia coli isolate 2016-17-292

Toxin (Protein)


Gene name chpB Uniprot ID U9Y4M4
Locus tag IHO92_RS20810 Protein ID WP_000239579.1
Coordinates 4246449..4246799 (-) Length 117 a.a.

Antitoxin (Protein)


Gene name chpS Uniprot ID U9Y2K1
Locus tag IHO92_RS20815 Protein ID WP_001223208.1
Coordinates 4246793..4247044 (-) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
IHO92_RS20790 4241725..4242747 - 1023 WP_001339490.1 ABC transporter permease -
IHO92_RS20795 4242761..4244263 - 1503 WP_000205793.1 sugar ABC transporter ATP-binding protein -
IHO92_RS20800 4244573..4245529 - 957 WP_000265933.1 galactofuranose ABC transporter substrate-binding protein YtfQ -
IHO92_RS20805 4245839..4246369 + 531 WP_000055072.1 inorganic diphosphatase -
IHO92_RS20810 4246449..4246799 - 351 WP_000239579.1 endoribonuclease toxin ChpB Toxin
IHO92_RS20815 4246793..4247044 - 252 WP_001223208.1 type II toxin-antitoxin system antitoxin ChpS Antitoxin
IHO92_RS20820 4247257..4247598 - 342 WP_001219160.1 gamma-glutamylcyclotransferase -
IHO92_RS20825 4247601..4251380 - 3780 WP_000060921.1 autotransporter assembly complex protein TamB -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

mRNA interferase PemK-like

(8-114)

Antitoxin

SpoVT-AbrB domain

(6-49)


Sequences

Toxin        


Download         Length: 117 a.a.        Molecular weight: 12511.45 Da        Isoelectric Point: 5.6219

>T289651 WP_000239579.1 NZ_LR882493:c4246799-4246449 [Escherichia coli]
MVKKSEFERGDIVLVGFDPASGHEQQGAGRPALVLSVQAFNQLGMTLVAPITQGGNFARYAGFSVPLHCEEGDVHGVVLV
NQVRMMDLRARLAKRIGLAADEVVEEALLRLQAVVE

Download         Length: 351 bp

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9271.58 Da        Isoelectric Point: 4.4201

>AT289651 WP_001223208.1 NZ_LR882493:c4247044-4246793 [Escherichia coli]
MRITIKRWGNSAGMVIPNIVMKELNLQPGQSVEAQVSNNQLILTPISRRYSLDELLAQCDMNAAELSEQDVWGKSTPAGD
EIW

Download         Length: 252 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0E0Y8A8

Antitoxin

Source ID Structure
AlphaFold DB A0A7U9LQ26

References