Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2157755..2158026 | Replicon | chromosome |
| Accession | NZ_LR882057 | ||
| Organism | Escherichia coli isolate 2014-01-7375 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2157885..2157988 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2157755..2158026 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IHP09_RS10380 | 2154310..2154972 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| IHP09_RS10385 | 2154996..2155652 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| IHP09_RS10390 | 2155754..2155984 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IHP09_RS10395 | 2156123..2156497 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| IHP09_RS10400 | 2156501..2157373 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| IHP09_RS10405 | 2157386..2157727 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2157755..2158026 | - | 272 | - | - | Antitoxin |
| - | 2157885..2157988 | + | 104 | - | - | Toxin |
| IHP09_RS10410 | 2158123..2158779 | + | 657 | WP_000812710.1 | protein-serine/threonine phosphatase | - |
| IHP09_RS10415 | 2158780..2158971 | - | 192 | WP_001296140.1 | YebW family protein | - |
| IHP09_RS10420 | 2159076..2159312 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| IHP09_RS10425 | 2159430..2160869 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T289610 NZ_LR882057:2157885-2157988 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT289610 NZ_LR882057:c2158026-2157755 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
