Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1940861..1941132 | Replicon | chromosome |
| Accession | NZ_LR882052 | ||
| Organism | Escherichia coli isolate 2015-01-466 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1940991..1941094 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1940861..1941132 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QREC_RS09225 | 1937416..1938078 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QREC_RS09230 | 1938102..1938758 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| QREC_RS09235 | 1938860..1939090 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QREC_RS09240 | 1939229..1939603 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| QREC_RS09245 | 1939607..1940479 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| QREC_RS09250 | 1940492..1940833 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1940861..1941132 | - | 272 | - | - | Antitoxin |
| - | 1940991..1941094 | + | 104 | - | - | Toxin |
| QREC_RS09255 | 1941229..1941885 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| QREC_RS09260 | 1941886..1942077 | - | 192 | WP_000457842.1 | YebW family protein | - |
| QREC_RS09265 | 1942182..1942418 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| QREC_RS09270 | 1942536..1943975 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T289585 NZ_LR882052:1940991-1941094 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT289585 NZ_LR882052:c1941132-1940861 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
