Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2012613..2012884 | Replicon | chromosome |
| Accession | NZ_LR881940 | ||
| Organism | Escherichia coli isolate 2015-01-2097 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2012743..2012846 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2012613..2012884 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IHP11_RS09630 | 2009168..2009830 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| IHP11_RS09635 | 2009854..2010510 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein | - |
| IHP11_RS09640 | 2010612..2010842 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IHP11_RS09645 | 2010981..2011355 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| IHP11_RS09650 | 2011359..2012231 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| IHP11_RS09655 | 2012244..2012585 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2012613..2012884 | - | 272 | - | - | Antitoxin |
| - | 2012743..2012846 | + | 104 | - | - | Toxin |
| IHP11_RS09660 | 2012981..2013616 | + | 636 | WP_191521789.1 | protein-serine/threonine phosphatase | - |
| IHP11_RS09665 | 2013637..2013828 | - | 192 | WP_001338167.1 | YebW family protein | - |
| IHP11_RS09670 | 2013933..2014169 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| IHP11_RS09675 | 2014287..2015726 | - | 1440 | WP_001338165.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1938322..2015732 | 77410 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T289542 NZ_LR881940:2012743-2012846 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT289542 NZ_LR881940:c2012884-2012613 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
