Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type V Classification (family/domain) ghoTS/ghoT-GhoS
Location 4336078..4336575 Replicon chromosome
Accession NZ_LR881938
Organism Escherichia coli str. K-12 substr. MG1655 strain K-12

Toxin (Protein)


Gene name ghoT Uniprot ID L4JJG6
Locus tag IEU92_RS20850 Protein ID WP_001173343.1
Coordinates 4336402..4336575 (+) Length 58 a.a.

Antitoxin (Protein)


Gene name ghoS Uniprot ID L4JK92
Locus tag IEU92_RS20845 Protein ID WP_000398619.1
Coordinates 4336078..4336374 (+) Length 99 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
IEU92_RS20825 4332809..4333528 - 720 WP_000611288.1 two-component system response regulator DcuR -
IEU92_RS20830 4333525..4335156 - 1632 WP_001216477.1 sensor histidine kinase -
IEU92_RS20835 4335337..4335567 + 231 WP_000371704.1 (4Fe-4S)-binding protein -
IEU92_RS20840 4335579..4335851 + 273 WP_000405651.1 N-acetyltransferase -
IEU92_RS20845 4336078..4336374 + 297 WP_000398619.1 type V toxin-antitoxin system endoribonuclease antitoxin GhoS Antitoxin
IEU92_RS20850 4336402..4336575 + 174 WP_001173343.1 type V toxin-antitoxin system toxin GhoT Toxin
IEU92_RS20855 4336694..4338211 - 1518 WP_001295074.1 lysine--tRNA ligase -
IEU92_RS20860 4338448..4339905 - 1458 WP_000856829.1 dipeptide/tripeptide permease DtpC -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin GhoT/OrtT

(4-57)

Antitoxin

Endoribonuclease antitoxin GhoS

(5-94)


Sequences

Toxin        


Download         Length: 58 a.a.        Molecular weight: 6555.06 Da        Isoelectric Point: 10.2288

>T289529 WP_001173343.1 NZ_LR881938:4336402-4336575 [Escherichia coli str. K-12 substr. MG1655]
MALFSKILIFYVIGVNISFVIIWFISHEKTHIRLLSAFLVGITWPMSLPVALLFSLF

Download         Length: 174 bp

Antitoxin


Download         Length: 99 a.a.        Molecular weight: 11467.97 Da        Isoelectric Point: 4.1705

>AT289529 WP_000398619.1 NZ_LR881938:4336078-4336374 [Escherichia coli str. K-12 substr. MG1655]
MEGKNKFNTYVVSFDYPSSYSSVFLRLRSLMYDMNFSSIVADEYGIPRQLNENSFAITTSLAASEIEDLIRLKCLDLPDI
DFDLNIMTVDDYFRQFYK

Download         Length: 297 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U9QI41

Antitoxin

Source ID Structure
PDB 2LLZ
AlphaFold DB A0A7U9QBH6

References