Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1907335..1907606 | Replicon | chromosome |
| Accession | NZ_LR881938 | ||
| Organism | Escherichia coli str. K-12 substr. MG1655 strain K-12 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1907373..1907476 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1907335..1907606 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IEU92_RS09355 | 1904492..1905931 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| IEU92_RS09360 | 1906049..1906285 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| IEU92_RS09365 | 1906390..1906581 | + | 192 | WP_000457842.1 | YebW family protein | - |
| IEU92_RS09370 | 1906582..1907238 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1907335..1907606 | + | 272 | - | - | Antitoxin |
| - | 1907373..1907476 | - | 104 | - | - | Toxin |
| IEU92_RS09375 | 1907634..1907975 | - | 342 | WP_000976476.1 | YebY family protein | - |
| IEU92_RS09380 | 1907988..1908860 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| IEU92_RS09385 | 1908864..1909238 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| IEU92_RS09390 | 1909377..1909607 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IEU92_RS09395 | 1909709..1910365 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| IEU92_RS09400 | 1910389..1911051 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T289515 NZ_LR881938:c1907476-1907373 [Escherichia coli str. K-12 substr. MG1655]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT289515 NZ_LR881938:1907335-1907606 [Escherichia coli str. K-12 substr. MG1655]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
