Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2773978..2774120 | Replicon | chromosome |
| Accession | NZ_LR881936 | ||
| Organism | Enterobacter cancerogenus strain UPC1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2773982..2774084 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2773978..2774120 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ENTER_RS13140 | 2770445..2770684 | + | 240 | WP_006176013.1 | DUF1480 family protein | - |
| ENTER_RS13145 | 2770719..2771363 | - | 645 | WP_202560798.1 | protein-serine/threonine phosphatase | - |
| ENTER_RS13150 | 2771533..2772483 | + | 951 | WP_202560799.1 | VirK/YbjX family protein | - |
| ENTER_RS13155 | 2772618..2773124 | - | 507 | WP_202560800.1 | YbjP/YqhG family protein | - |
| ENTER_RS13160 | 2773124..2773492 | - | 369 | WP_006176020.1 | hypothetical protein | - |
| ENTER_RS13165 | 2773713..2773904 | + | 192 | Protein_2575 | tyrosine-type recombinase/integrase | - |
| - | 2773978..2774120 | + | 143 | - | - | Antitoxin |
| - | 2773982..2774084 | - | 103 | - | - | Toxin |
| ENTER_RS13170 | 2774226..2774564 | - | 339 | WP_006176023.1 | YebY family protein | - |
| ENTER_RS13175 | 2774579..2775448 | - | 870 | WP_202560801.1 | copper homeostasis membrane protein CopD | - |
| ENTER_RS13180 | 2775450..2775821 | - | 372 | WP_202560802.1 | CopC domain-containing protein YobA | - |
| ENTER_RS13185 | 2775959..2776189 | + | 231 | WP_006176029.1 | DNA polymerase III subunit theta | - |
| ENTER_RS13190 | 2776300..2776950 | + | 651 | WP_202560803.1 | carbon-nitrogen hydrolase family protein | - |
| ENTER_RS13195 | 2776974..2777636 | + | 663 | WP_088208265.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T289493 NZ_LR881936:c2774084-2773982 [Enterobacter cancerogenus]
GCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 143 bp
>AT289493 NZ_LR881936:2773978-2774120 [Enterobacter cancerogenus]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTCAATCGCCTTGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTCAATCGCCTTGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
