Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2159866..2160009 | Replicon | chromosome |
| Accession | NZ_LR881934 | ||
| Organism | Citrobacter freundii strain PSV | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2159901..2160004 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2159866..2160009 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CITRO_RS10430 | 2156313..2156975 | - | 663 | WP_003841659.1 | exodeoxyribonuclease X | - |
| CITRO_RS10435 | 2156999..2157655 | - | 657 | WP_003841657.1 | carbon-nitrogen hydrolase family protein | - |
| CITRO_RS10440 | 2157762..2157992 | - | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| CITRO_RS10445 | 2158136..2158510 | + | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| CITRO_RS10450 | 2158514..2159386 | + | 873 | WP_049002332.1 | copper homeostasis membrane protein CopD | - |
| CITRO_RS10455 | 2159407..2159745 | + | 339 | WP_003034934.1 | YebY family protein | - |
| - | 2159866..2160009 | - | 144 | - | - | Antitoxin |
| - | 2159901..2160004 | + | 104 | - | - | Toxin |
| CITRO_RS10460 | 2160158..2160799 | + | 642 | WP_202581198.1 | protein-serine/threonine phosphatase | - |
| CITRO_RS10465 | 2160800..2160991 | - | 192 | WP_003034941.1 | YebW family protein | - |
| CITRO_RS10470 | 2161094..2161330 | - | 237 | WP_029139506.1 | DUF1480 family protein | - |
| CITRO_RS10475 | 2161431..2162819 | - | 1389 | WP_202581325.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T289477 NZ_LR881934:2159901-2160004 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT289477 NZ_LR881934:c2160009-2159866 [Citrobacter freundii]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
