Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1948965..1949199 | Replicon | chromosome |
| Accession | NZ_LR878365 | ||
| Organism | Shigella flexneri 3a isolate 83 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1949095..1949198 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1948965..1949199 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMV05_RS09720 | 1945520..1946182 | - | 663 | WP_000944269.1 | exodeoxyribonuclease X | - |
| JMV05_RS09725 | 1946206..1946862 | - | 657 | WP_000011667.1 | carbon-nitrogen hydrolase family protein YobB | - |
| JMV05_RS09730 | 1946964..1947194 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JMV05_RS09735 | 1947333..1947707 | + | 375 | WP_025758141.1 | CopC domain-containing protein YobA | - |
| JMV05_RS09740 | 1947711..1948583 | + | 873 | Protein_1899 | copper homeostasis membrane protein CopD | - |
| JMV05_RS09745 | 1948596..1948937 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1948965..1949199 | - | 235 | - | - | Antitoxin |
| - | 1949095..1949198 | + | 104 | - | - | Toxin |
| JMV05_RS09750 | 1949330..1950406 | - | 1077 | WP_025758140.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| JMV05_RS09755 | 1950372..1950653 | - | 282 | WP_005127484.1 | excisionase | - |
| JMV05_RS09760 | 1950770..1951919 | - | 1150 | Protein_1903 | IS3 family transposase | - |
| JMV05_RS09765 | 1951989..1952369 | + | 381 | Protein_1904 | IS66-like element accessory protein TnpA | - |
| JMV05_RS09770 | 1952371..1952538 | + | 168 | Protein_1905 | phage tail protein | - |
| JMV05_RS09775 | 1952489..1953112 | + | 624 | WP_152030437.1 | DUF4376 domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T289446 NZ_LR878365:1949095-1949198 [Shigella flexneri 3a]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT289446 NZ_LR878365:c1949199-1948965 [Shigella flexneri 3a]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGTTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGTTTTTTTTAT
