Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/Phd(antitoxin)
Location 72819..73363 Replicon chromosome
Accession NZ_LR861807
Organism Xanthomonas arboricola pv. juglandis isolate 3

Toxin (Protein)


Gene name relE Uniprot ID A0A2N7V9Q0
Locus tag H5027_RS00260 Protein ID WP_016902923.1
Coordinates 73064..73363 (+) Length 100 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID A0A2N7V9L6
Locus tag H5027_RS00255 Protein ID WP_016902922.1
Coordinates 72819..73076 (+) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
H5027_RS00240 67927..69435 - 1509 WP_016904858.1 ribonuclease H-like domain-containing protein -
H5027_RS00245 69432..71927 - 2496 WP_016904859.1 DEAD/DEAH box helicase -
H5027_RS00250 72101..72763 + 663 WP_039511099.1 hemolysin III family protein -
H5027_RS00255 72819..73076 + 258 WP_016902922.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
H5027_RS00260 73064..73363 + 300 WP_016902923.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
H5027_RS00265 73482..73976 - 495 WP_026064422.1 hypothetical protein -
H5027_RS00270 74173..74511 - 339 Protein_53 helix-turn-helix transcriptional regulator -
H5027_RS00275 74525..74767 + 243 WP_053051357.1 hypothetical protein -
H5027_RS00280 74927..76018 - 1092 WP_053051360.1 hypothetical protein -
H5027_RS00285 76474..77187 + 714 WP_053054205.1 hypothetical protein -
H5027_RS00290 77198..78091 - 894 WP_053046150.1 LysR family transcriptional regulator -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-90)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-73)


Sequences

Toxin        


Download         Length: 100 a.a.        Molecular weight: 11336.04 Da        Isoelectric Point: 9.0225

>T289438 WP_016902923.1 NZ_LR861807:73064-73363 [Xanthomonas arboricola pv. juglandis]
MAEIVWSEPAVADLDAIADYIALEDAAAAAALVRRVFAHVEQLAEHPESGSRPQELKRSRYRQIVEPPCRVFYRVDGQRV
VVVHVMRSERLLRKNRLSR

Download         Length: 300 bp

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9704.23 Da        Isoelectric Point: 8.6056

>AT289438 WP_016902922.1 NZ_LR861807:72819-73076 [Xanthomonas arboricola pv. juglandis]
MRTELVTTLKRQATELLADVERDKEPILITQHGLPSAYLVDVASYERMQQRMAILEGIARGEMAVAEGRSLSHEQAKQRL
ARWLK

Download         Length: 258 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A2N7V9Q0

Antitoxin

Source ID Structure
AlphaFold DB A0A2N7V9L6

References