Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/Phd(antitoxin)
Location 65665..66209 Replicon chromosome
Accession NZ_LR861805
Organism Xanthomonas sp. CPBF 426 isolate

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag H7A87_RS00240 Protein ID WP_104585946.1
Coordinates 65910..66209 (+) Length 100 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag H7A87_RS00235 Protein ID WP_104585948.1
Coordinates 65665..65922 (+) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
H7A87_RS00225 62266..64761 - 2496 WP_166766693.1 DEAD/DEAH box helicase -
H7A87_RS00230 64935..65597 + 663 WP_104585950.1 hemolysin III family protein -
H7A87_RS00235 65665..65922 + 258 WP_104585948.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
H7A87_RS00240 65910..66209 + 300 WP_104585946.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
H7A87_RS00245 66221..66739 - 519 WP_119127188.1 hypothetical protein -
H7A87_RS00250 66929..68026 - 1098 WP_119127189.1 hypothetical protein -
H7A87_RS00255 68377..69021 + 645 WP_104650099.1 glutathione S-transferase family protein -
H7A87_RS00260 69171..69878 + 708 WP_119127190.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-90)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-73)


Sequences

Toxin        


Download         Length: 100 a.a.        Molecular weight: 11316.00 Da        Isoelectric Point: 9.0380

>T289435 WP_104585946.1 NZ_LR861805:65910-66209 [Xanthomonas sp. CPBF 426]
MAEIVWSEPAVADLDAIADYIALEDAAAAAALVRRVVAHVEQLAEHPESGSRPQELKRSRYRQIVEPPCRVFYRVDGQRV
VVVHVMRSERLLRRNRLSR

Download         Length: 300 bp

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9716.22 Da        Isoelectric Point: 8.6056

>AT289435 WP_104585948.1 NZ_LR861805:65665-65922 [Xanthomonas sp. CPBF 426]
MRTELVTTLKRQATELLADVERDKEPILITQHGLPSAYLVDVTSYERLQQRMAILEGIARGEMAVAEGRSLSHEQAKQRL
ARWLK

Download         Length: 258 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References