Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-StbC
Location 4841834..4842501 Replicon chromosome
Accession NZ_LR861803
Organism Xanthomonas euroxanthea isolate

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag H7A86_RS20170 Protein ID WP_102582219.1
Coordinates 4842085..4842501 (+) Length 139 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag H7A86_RS20165 Protein ID WP_102582218.1
Coordinates 4841834..4842088 (+) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
H7A86_RS20145 4838283..4839548 + 1266 WP_164739643.1 cardiolipin synthase B -
H7A86_RS20150 4839591..4840127 - 537 WP_119132629.1 hypothetical protein -
H7A86_RS20155 4840397..4840603 + 207 WP_104586339.1 hypothetical protein -
H7A86_RS20160 4840590..4841696 + 1107 WP_119132630.1 type II toxin-antitoxin system RelE/ParE family toxin -
H7A86_RS20165 4841834..4842088 + 255 WP_102582218.1 Arc family DNA-binding protein Antitoxin
H7A86_RS20170 4842085..4842501 + 417 WP_102582219.1 type II toxin-antitoxin system VapC family toxin Toxin
H7A86_RS20175 4842627..4843187 - 561 WP_119132631.1 hypothetical protein -
H7A86_RS20180 4843885..4845510 + 1626 WP_119132632.1 enterochelin esterase -
H7A86_RS20185 4845593..4845994 - 402 WP_126968946.1 DUF2384 domain-containing protein -
H7A86_RS20190 4846299..4846754 + 456 WP_180707969.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 4836221..4856411 20190


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(2-127)

Antitoxin

Arc-like DNA binding domain

(1-41)


Sequences

Toxin        


Download         Length: 139 a.a.        Molecular weight: 14754.04 Da        Isoelectric Point: 5.6845

>T289434 WP_102582219.1 NZ_LR861803:4842085-4842501 [Xanthomonas euroxanthea]
VILLDTNVISELWRPQPNPKVVAWIDAQAVETLFLSVVTVAELRFGIAVMPEGRKRSTLHARLESDVLPLFNGRLLAFDL
DASHAFATLASKARAAGLTLGRADAYIAATAAAQGLTVATRDTAPFAAMALDVIDPWS

Download         Length: 417 bp

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9103.51 Da        Isoelectric Point: 10.7542

>AT289434 WP_102582218.1 NZ_LR861803:4841834-4842088 [Xanthomonas euroxanthea]
MPSFTVRNIPDEVHRAIRARAALHGRSTEAEIRAILESAAKPADRVKLGSLLVDIGRDAGLTAKQADAFDTLRDKTAIKP
ISLK

Download         Length: 255 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References