Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3181012..3181157 | Replicon | chromosome |
| Accession | NZ_LR792628 | ||
| Organism | Klebsiella pneumoniae isolate SB5881 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3181019..3181121 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3181012..3181157 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HU711_RS15540 | 3176544..3177977 | + | 1434 | WP_016529029.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HU711_RS15545 | 3178093..3178332 | + | 240 | WP_002911393.1 | YebV family protein | - |
| HU711_RS15550 | 3178430..3178621 | + | 192 | WP_002911395.1 | YebW family protein | - |
| HU711_RS15555 | 3178618..3179271 | - | 654 | WP_016529030.1 | protein-serine/threonine phosphatase | - |
| HU711_RS15560 | 3179428..3180396 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| HU711_RS15565 | 3180501..3180644 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3181012..3181157 | + | 146 | - | - | Antitoxin |
| - | 3181019..3181121 | - | 103 | - | - | Toxin |
| HU711_RS15570 | 3181280..3181618 | - | 339 | WP_016529031.1 | YebY family protein | - |
| HU711_RS15575 | 3181635..3182504 | - | 870 | WP_004184661.1 | copper homeostasis membrane protein CopD | - |
| HU711_RS15580 | 3182508..3182882 | - | 375 | WP_016529032.1 | CopC domain-containing protein YobA | - |
| HU711_RS15585 | 3182995..3183225 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HU711_RS15590 | 3183304..3183963 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| HU711_RS15595 | 3183967..3186027 | - | 2061 | WP_004148850.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T289354 NZ_LR792628:c3181121-3181019 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT289354 NZ_LR792628:3181012-3181157 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
