Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2295273..2295544 | Replicon | chromosome |
| Accession | NZ_LR782232 | ||
| Organism | Escherichia coli isolate SC467 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2295403..2295506 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2295273..2295544 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV361_RS10885 | 2291828..2292490 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HV361_RS10890 | 2292514..2293170 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| HV361_RS10895 | 2293272..2293502 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HV361_RS10900 | 2293641..2294015 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| HV361_RS10905 | 2294019..2294891 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| HV361_RS10910 | 2294904..2295245 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2295273..2295544 | - | 272 | - | - | Antitoxin |
| - | 2295403..2295506 | + | 104 | - | - | Toxin |
| HV361_RS10915 | 2295641..2296297 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| HV361_RS10920 | 2296298..2296489 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HV361_RS10925 | 2296594..2296830 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HV361_RS10930 | 2296948..2298387 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T289336 NZ_LR782232:2295403-2295506 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT289336 NZ_LR782232:c2295544-2295273 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
