Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/Cpta(toxin)
Location 1143266..1143920 Replicon chromosome
Accession NZ_LR782232
Organism Escherichia coli isolate SC467

Toxin (Protein)


Gene name cptA Uniprot ID F4NJ21
Locus tag HV361_RS05460 Protein ID WP_000244772.1
Coordinates 1143513..1143920 (+) Length 136 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID S1PPB1
Locus tag HV361_RS05455 Protein ID WP_000354046.1
Coordinates 1143266..1143532 (+) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HV361_RS05430 1138554..1139297 + 744 WP_000951964.1 SDR family oxidoreductase -
HV361_RS05435 1139354..1140787 - 1434 WP_001307385.1 6-phospho-beta-glucosidase BglA -
HV361_RS05440 1140832..1141143 + 312 WP_001182954.1 N(4)-acetylcytidine aminohydrolase -
HV361_RS05445 1141307..1141966 + 660 WP_000250274.1 hemolysin III family protein -
HV361_RS05450 1142043..1143023 - 981 WP_000886062.1 tRNA-modifying protein YgfZ -
HV361_RS05455 1143266..1143532 + 267 WP_000354046.1 FAD assembly factor SdhE Antitoxin
HV361_RS05460 1143513..1143920 + 408 WP_000244772.1 protein YgfX Toxin
HV361_RS05465 1143960..1144481 - 522 WP_001055874.1 flavodoxin FldB -
HV361_RS05470 1144593..1145489 + 897 WP_000806638.1 site-specific tyrosine recombinase XerD -
HV361_RS05475 1145514..1146224 + 711 WP_000715214.1 bifunctional protein-disulfide isomerase/oxidoreductase DsbC -
HV361_RS05480 1146230..1147963 + 1734 WP_000813223.1 single-stranded-DNA-specific exonuclease RecJ -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(3-131)

Antitoxin

Flavinator of succinate dehydrogenase

(7-79)


Sequences

Toxin        


Download         Length: 136 a.a.        Molecular weight: 16048.02 Da        Isoelectric Point: 11.2511

>T289332 WP_000244772.1 NZ_LR782232:1143513-1143920 [Escherichia coli]
VVLWQSDLRVSWRAQWLSLLIHGLVAAVILLMPWPLSYTPLWMVLLSLVVFDCVRSQRRINARQGEIRLLMDGRLRWQGQ
EWCIVKAPWMIKSGMMLRLRSDGGKRQHLWLAADSMDEAEWRDLRRILLQQETQR

Download         Length: 408 bp

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 10547.12 Da        Isoelectric Point: 5.1599

>AT289332 WP_000354046.1 NZ_LR782232:1143266-1143532 [Escherichia coli]
MDINNKARIHWACRRGMRELDISIMPFFEHEYDSLSDDEKRIFIRLLECDDPDLFNWLMNHGKPADAELEMMVRLIQTRN
RERGPVAI

Download         Length: 267 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0E0XYB4

Antitoxin

Source ID Structure
PDB 6B58
PDB 1X6I
PDB 1X6J
PDB 6C12
AlphaFold DB A0A7U9QD57

References