Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2300330..2300601 | Replicon | chromosome |
| Accession | NZ_LR778153 | ||
| Organism | Escherichia coli isolate SC480 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2300460..2300563 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2300330..2300601 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H1C95_RS11140 | 2296885..2297547 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| H1C95_RS11145 | 2297571..2298227 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| H1C95_RS11150 | 2298329..2298559 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H1C95_RS11155 | 2298698..2299072 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| H1C95_RS11160 | 2299076..2299948 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| H1C95_RS11165 | 2299961..2300302 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2300330..2300601 | - | 272 | - | - | Antitoxin |
| - | 2300460..2300563 | + | 104 | - | - | Toxin |
| H1C95_RS11170 | 2300698..2301354 | + | 657 | WP_000812735.1 | protein-serine/threonine phosphatase | - |
| H1C95_RS11175 | 2301355..2301546 | - | 192 | WP_001296140.1 | YebW family protein | - |
| H1C95_RS11180 | 2301651..2301887 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| H1C95_RS11185 | 2302005..2303444 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T289311 NZ_LR778153:2300460-2300563 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT289311 NZ_LR778153:c2300601-2300330 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
