Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | vapBC/HTH_10(toxin) |
| Location | 1998376..1999358 | Replicon | chromosome |
| Accession | NC_020247 | ||
| Organism | Sulfolobus acidocaldarius Ron12/I | ||
Toxin (Protein)
| Gene name | vapC | Uniprot ID | M1IXW8 |
| Locus tag | SACRON12I_RS10480 | Protein ID | WP_011278959.1 |
| Coordinates | 1998738..1999358 (+) | Length | 207 a.a. |
Antitoxin (Protein)
| Gene name | vapB | Uniprot ID | M1I813 |
| Locus tag | SACRON12I_RS10475 | Protein ID | WP_011278958.1 |
| Coordinates | 1998376..1998726 (+) | Length | 117 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SACRON12I_RS10455 (SacRon12I_10775) | 1993780..1995714 | - | 1935 | WP_011278954.1 | DUF2079 domain-containing protein | - |
| SACRON12I_RS10460 (SacRon12I_10780) | 1995923..1996627 | + | 705 | WP_011278955.1 | zinc ribbon domain-containing protein | - |
| SACRON12I_RS10465 (SacRon12I_10785) | 1996711..1997355 | - | 645 | WP_011278956.1 | 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase | - |
| SACRON12I_RS10470 (SacRon12I_10790) | 1997402..1998097 | - | 696 | WP_011278957.1 | glycerophosphodiester phosphodiesterase | - |
| SACRON12I_RS10475 (SacRon12I_10795) | 1998376..1998726 | + | 351 | WP_011278958.1 | DUF488 family protein | Antitoxin |
| SACRON12I_RS10480 (SacRon12I_10800) | 1998738..1999358 | + | 621 | WP_011278959.1 | helix-turn-helix domain-containing protein | Toxin |
| SACRON12I_RS10485 (SacRon12I_10805) | 1999463..2000869 | - | 1407 | WP_015385784.1 | amidase | - |
| SACRON12I_RS10490 (SacRon12I_10810) | 2001073..2001522 | + | 450 | WP_230937910.1 | hypothetical protein | - |
| SACRON12I_RS10495 (SacRon12I_10815) | 2001612..2003258 | - | 1647 | WP_011278962.1 | thermopsin family protease | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 207 a.a. Molecular weight: 23490.89 Da Isoelectric Point: 9.6857
>T28930 WP_011278959.1 NC_020247:1998738-1999358 [Sulfolobus acidocaldarius Ron12/I]
MGAGDVKKPINVTLILQNHPCLVMKLFEEMNVKAEINNVKMRESVTDHIATLKLTEKLLKELKERRSKTLRISENSVWIR
TEGCQVCKILYVSDAVVEKVKVVGSDAVMYKLIVPNLLSLKSLIDELNKIGVKAMVGSISELDEEQLTERQLEILKLSYK
MGFFDVDRRITMTELAEKLGIKAPTLEEILRRALRKAVKYYLDKKG
MGAGDVKKPINVTLILQNHPCLVMKLFEEMNVKAEINNVKMRESVTDHIATLKLTEKLLKELKERRSKTLRISENSVWIR
TEGCQVCKILYVSDAVVEKVKVVGSDAVMYKLIVPNLLSLKSLIDELNKIGVKAMVGSISELDEEQLTERQLEILKLSYK
MGFFDVDRRITMTELAEKLGIKAPTLEEILRRALRKAVKYYLDKKG
Download Length: 621 bp
>T28930 NC_020247:1998738-1999358 [Sulfolobus acidocaldarius Ron12/I]
ATGGGTGCTGGTGATGTAAAGAAACCTATAAATGTTACACTTATTCTACAGAATCACCCCTGCTTAGTTATGAAATTATT
TGAAGAGATGAATGTAAAGGCGGAAATTAACAATGTGAAGATGAGGGAAAGTGTTACTGACCACATTGCAACCTTAAAGT
TAACTGAAAAGTTGCTTAAGGAGTTGAAAGAAAGAAGGTCAAAAACCTTGAGGATAAGTGAAAATAGCGTCTGGATCAGG
ACTGAAGGTTGCCAGGTATGTAAAATCCTTTATGTAAGTGACGCTGTAGTTGAGAAAGTGAAAGTTGTAGGAAGTGATGC
AGTTATGTATAAACTAATTGTTCCAAATCTACTCTCTCTGAAGAGTCTTATAGATGAGCTCAACAAGATAGGTGTAAAGG
CTATGGTAGGTAGCATATCTGAGCTAGATGAAGAGCAACTGACAGAAAGGCAATTGGAGATATTGAAATTATCATATAAG
ATGGGTTTCTTTGATGTAGACAGAAGAATAACCATGACGGAATTAGCTGAAAAACTTGGGATCAAGGCTCCTACTTTGGA
AGAGATACTGAGAAGGGCTCTACGAAAGGCAGTTAAGTATTATCTAGATAAAAAAGGATAA
ATGGGTGCTGGTGATGTAAAGAAACCTATAAATGTTACACTTATTCTACAGAATCACCCCTGCTTAGTTATGAAATTATT
TGAAGAGATGAATGTAAAGGCGGAAATTAACAATGTGAAGATGAGGGAAAGTGTTACTGACCACATTGCAACCTTAAAGT
TAACTGAAAAGTTGCTTAAGGAGTTGAAAGAAAGAAGGTCAAAAACCTTGAGGATAAGTGAAAATAGCGTCTGGATCAGG
ACTGAAGGTTGCCAGGTATGTAAAATCCTTTATGTAAGTGACGCTGTAGTTGAGAAAGTGAAAGTTGTAGGAAGTGATGC
AGTTATGTATAAACTAATTGTTCCAAATCTACTCTCTCTGAAGAGTCTTATAGATGAGCTCAACAAGATAGGTGTAAAGG
CTATGGTAGGTAGCATATCTGAGCTAGATGAAGAGCAACTGACAGAAAGGCAATTGGAGATATTGAAATTATCATATAAG
ATGGGTTTCTTTGATGTAGACAGAAGAATAACCATGACGGAATTAGCTGAAAAACTTGGGATCAAGGCTCCTACTTTGGA
AGAGATACTGAGAAGGGCTCTACGAAAGGCAGTTAAGTATTATCTAGATAAAAAAGGATAA
Antitoxin
Download Length: 117 a.a. Molecular weight: 13918.19 Da Isoelectric Point: 8.2649
>AT28930 WP_011278958.1 NC_020247:1998376-1998726 [Sulfolobus acidocaldarius Ron12/I]
MIKIKNVYDKPEINDGIRILVERTWPASVTRGSIDMWLRDLAPSEELITWYNYEPQKWEEFKRRYLEELRYNPKVKPLLM
IVKMTKIVTFLYSGDPTYNNAVVLKEYIESLINKES
MIKIKNVYDKPEINDGIRILVERTWPASVTRGSIDMWLRDLAPSEELITWYNYEPQKWEEFKRRYLEELRYNPKVKPLLM
IVKMTKIVTFLYSGDPTYNNAVVLKEYIESLINKES
Download Length: 351 bp
>AT28930 NC_020247:1998376-1998726 [Sulfolobus acidocaldarius Ron12/I]
ATGATAAAAATAAAAAACGTTTATGACAAACCAGAGATTAACGACGGGATTAGAATATTGGTCGAGAGGACATGGCCAGC
CTCTGTAACTAGAGGCTCTATCGATATGTGGCTTAGGGATCTTGCCCCTTCTGAAGAATTAATAACATGGTATAATTATG
AACCGCAAAAATGGGAGGAATTTAAGAGAAGATATCTAGAAGAGTTGAGGTACAATCCAAAAGTTAAACCTTTATTGATG
ATAGTTAAGATGACTAAGATCGTAACATTTCTATACTCAGGAGACCCCACATACAATAACGCAGTTGTGCTCAAAGAATA
CATAGAAAGTTTAATAAATAAGGAAAGTTAA
ATGATAAAAATAAAAAACGTTTATGACAAACCAGAGATTAACGACGGGATTAGAATATTGGTCGAGAGGACATGGCCAGC
CTCTGTAACTAGAGGCTCTATCGATATGTGGCTTAGGGATCTTGCCCCTTCTGAAGAATTAATAACATGGTATAATTATG
AACCGCAAAAATGGGAGGAATTTAAGAGAAGATATCTAGAAGAGTTGAGGTACAATCCAAAAGTTAAACCTTTATTGATG
ATAGTTAAGATGACTAAGATCGTAACATTTCTATACTCAGGAGACCCCACATACAATAACGCAGTTGTGCTCAAAGAATA
CATAGAAAGTTTAATAAATAAGGAAAGTTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|