Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 846516..846784 Replicon chromosome
Accession NZ_LR778152
Organism Escherichia coli isolate SC477

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 846644..846746 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 846516..846784 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
H1D09_RS03940 843069..843731 - 663 WP_000944249.1 exodeoxyribonuclease X -
H1D09_RS03945 843755..844411 - 657 WP_000011664.1 carbon-nitrogen hydrolase family protein -
H1D09_RS03950 844513..844743 - 231 WP_000916763.1 DNA polymerase III subunit theta -
H1D09_RS03955 844882..845256 + 375 WP_000168747.1 CopC domain-containing protein YobA -
H1D09_RS03960 845260..846132 + 873 WP_112886263.1 copper homeostasis membrane protein CopD -
H1D09_RS03965 846145..846486 + 342 WP_000976472.1 YebY family protein -
- 846516..846784 - 269 - - Antitoxin
- 846644..846746 + 103 - - Toxin
H1D09_RS03970 846881..847537 + 657 WP_001357783.1 protein-serine/threonine phosphatase -
H1D09_RS03975 847538..847729 - 192 WP_001317886.1 YebW family protein -
H1D09_RS03980 847834..848070 - 237 WP_001295499.1 DUF1480 family protein -
H1D09_RS03985 848188..849627 - 1440 WP_097420077.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 103 bp

>T289281 NZ_LR778152:846644-846746 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 269 bp

>AT289281 NZ_LR778152:c846784-846516 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References