Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) Hha-TomB/-
Location 1855744..1856362 Replicon chromosome
Accession NZ_LR778149
Organism Escherichia coli isolate SC487

Toxin (Protein)


Gene name Hha Uniprot ID H5UYE2
Locus tag H1C96_RS09165 Protein ID WP_001291435.1
Coordinates 1856144..1856362 (+) Length 73 a.a.

Antitoxin (Protein)


Gene name TomB Uniprot ID S1PTH5
Locus tag H1C96_RS09160 Protein ID WP_000344800.1
Coordinates 1855744..1856118 (+) Length 125 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
H1C96_RS09150 1850833..1852026 + 1194 WP_001295324.1 multidrug efflux RND transporter periplasmic adaptor subunit AcrA -
H1C96_RS09155 1852049..1855198 + 3150 WP_097732160.1 efflux RND transporter permease AcrB -
H1C96_RS09160 1855744..1856118 + 375 WP_000344800.1 Hha toxicity modulator TomB Antitoxin
H1C96_RS09165 1856144..1856362 + 219 WP_001291435.1 hemolysin expression modulator Hha Toxin
H1C96_RS09170 1856534..1857085 + 552 WP_000102568.1 maltose O-acetyltransferase -
H1C96_RS09175 1857201..1857671 + 471 WP_000136192.1 YlaC family protein -
H1C96_RS09180 1857835..1859385 + 1551 WP_001299455.1 cyclic-guanylate-specific phosphodiesterase PdeB -
H1C96_RS09185 1859427..1859780 - 354 WP_000878140.1 DUF1428 domain-containing protein -
H1C96_RS09195 1860159..1860470 + 312 WP_000409911.1 MGMT family protein -
H1C96_RS09200 1860501..1861073 - 573 WP_000779826.1 lipoprotein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Haemolysin expression modulating, HHA

(13-69)

Antitoxin

Biofilm formation regulator YbaJ

(1-117)


Sequences

Toxin        


Download         Length: 73 a.a.        Molecular weight: 8628.00 Da        Isoelectric Point: 8.9008

>T289234 WP_001291435.1 NZ_LR778149:1856144-1856362 [Escherichia coli]
MSEKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPSSVWKFIR

Download         Length: 219 bp

Antitoxin


Download         Length: 125 a.a.        Molecular weight: 14557.39 Da        Isoelectric Point: 4.7395

>AT289234 WP_000344800.1 NZ_LR778149:1855744-1856118 [Escherichia coli]
MDEYSPKRHDIAQLKFLCETLYHDCLANLEESNHGWVNDPTSAINLQLNELIEHIATFALNYKIKYNEDNKLIEQIDEYL
DDTFMLFSSYGINMQDLQKWRKSGNRLFRCFVNATKENPASLSC

Download         Length: 375 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 2MW2
PDB 1JW2

Antitoxin

Source ID Structure
AlphaFold DB A0A7U9QBQ5

References