Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 289875..290146 | Replicon | chromosome |
| Accession | NZ_LR778149 | ||
| Organism | Escherichia coli isolate SC487 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 290005..290108 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 289875..290146 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H1C96_RS01460 | 286430..287092 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| H1C96_RS01465 | 287116..287772 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| H1C96_RS01470 | 287874..288104 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H1C96_RS01475 | 288243..288617 | + | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| H1C96_RS01480 | 288621..289493 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| H1C96_RS01485 | 289506..289847 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 289875..290146 | - | 272 | - | - | Antitoxin |
| - | 290005..290108 | + | 104 | - | - | Toxin |
| H1C96_RS01490 | 290243..290899 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| H1C96_RS01495 | 290900..291091 | - | 192 | WP_001296140.1 | YebW family protein | - |
| H1C96_RS01500 | 291196..291432 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| H1C96_RS01505 | 291550..292989 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T289228 NZ_LR778149:290005-290108 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT289228 NZ_LR778149:c290146-289875 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
