Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 846336..846604 | Replicon | chromosome |
| Accession | NZ_LR778146 | ||
| Organism | Escherichia coli isolate SC455 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 846464..846566 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 846336..846604 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H1D08_RS03940 | 842889..843551 | - | 663 | WP_000944249.1 | exodeoxyribonuclease X | - |
| H1D08_RS03945 | 843575..844231 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| H1D08_RS03950 | 844333..844563 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H1D08_RS03955 | 844702..845076 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| H1D08_RS03960 | 845080..845952 | + | 873 | WP_112886263.1 | copper homeostasis membrane protein CopD | - |
| H1D08_RS03965 | 845965..846306 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 846336..846604 | - | 269 | - | - | Antitoxin |
| - | 846464..846566 | + | 103 | - | - | Toxin |
| H1D08_RS03970 | 846701..847357 | + | 657 | WP_001357783.1 | protein-serine/threonine phosphatase | - |
| H1D08_RS03975 | 847358..847549 | - | 192 | WP_001317886.1 | YebW family protein | - |
| H1D08_RS03980 | 847654..847890 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| H1D08_RS03985 | 848008..849447 | - | 1440 | WP_097420077.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T289169 NZ_LR778146:846464-846566 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT289169 NZ_LR778146:c846604-846336 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
