Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2321973..2322244 | Replicon | chromosome |
| Accession | NZ_LR778145 | ||
| Organism | Escherichia coli isolate SC423 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2322103..2322206 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2321973..2322244 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H1C75_RS11005 | 2318528..2319190 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| H1C75_RS11010 | 2319214..2319870 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| H1C75_RS11015 | 2319972..2320202 | - | 231 | WP_000916759.1 | DNA polymerase III subunit theta | - |
| H1C75_RS11020 | 2320341..2320715 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| H1C75_RS11025 | 2320719..2321591 | + | 873 | WP_160385102.1 | copper homeostasis membrane protein CopD | - |
| H1C75_RS11030 | 2321604..2321945 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2321973..2322244 | - | 272 | - | - | Antitoxin |
| - | 2322103..2322206 | + | 104 | - | - | Toxin |
| H1C75_RS11035 | 2322341..2322997 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| H1C75_RS11040 | 2322998..2323189 | - | 192 | WP_001296140.1 | YebW family protein | - |
| H1C75_RS11045 | 2323294..2323530 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| H1C75_RS11050 | 2323648..2325087 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T289158 NZ_LR778145:2322103-2322206 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT289158 NZ_LR778145:c2322244-2321973 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
