Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3616041..3616312 | Replicon | chromosome |
| Accession | NZ_LR778143 | ||
| Organism | Escherichia coli isolate SC422 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3616171..3616274 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3616041..3616312 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H1C98_RS17265 | 3612596..3613258 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| H1C98_RS17270 | 3613282..3613938 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| H1C98_RS17275 | 3614040..3614270 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H1C98_RS17280 | 3614409..3614783 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| H1C98_RS17285 | 3614787..3615659 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| H1C98_RS17290 | 3615672..3616013 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 3616041..3616312 | - | 272 | - | - | Antitoxin |
| - | 3616171..3616274 | + | 104 | - | - | Toxin |
| H1C98_RS17295 | 3616409..3617065 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| H1C98_RS17300 | 3617066..3617257 | - | 192 | WP_001296140.1 | YebW family protein | - |
| H1C98_RS17305 | 3617362..3617598 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| H1C98_RS17310 | 3617716..3619155 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T289146 NZ_LR778143:3616171-3616274 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT289146 NZ_LR778143:c3616312-3616041 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
